Bhec010184.1
Basic Information
- Insect
- Brenthis hecate
- Gene Symbol
- -
- Assembly
- GCA_951806755.1
- Location
- OX638257.1:1752302-1756676[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0016 0.13 13.2 4.1 1 23 157 180 157 180 0.98 2 18 0.00035 0.029 15.3 1.5 1 23 189 212 189 212 0.97 3 18 0.028 2.3 9.3 0.8 2 23 225 247 225 247 0.97 4 18 0.0041 0.33 12.0 1.0 1 23 256 279 256 279 0.95 5 18 3.5e-05 0.0028 18.5 1.3 1 23 291 314 291 314 0.97 6 18 1.1e-05 0.00092 20.0 0.7 2 23 343 365 342 365 0.97 7 18 0.00037 0.03 15.2 1.3 2 23 375 397 374 397 0.96 8 18 0.02 1.6 9.8 0.9 2 20 402 420 401 422 0.91 9 18 0.0015 0.12 13.3 3.5 2 21 427 446 426 449 0.94 10 18 0.022 1.7 9.7 1.7 2 23 458 480 457 480 0.93 11 18 0.00081 0.065 14.2 1.8 1 23 485 508 485 508 0.94 12 18 0.00014 0.011 16.6 0.4 2 23 519 541 518 541 0.96 13 18 0.00072 0.058 14.3 0.5 1 23 568 591 568 591 0.92 14 18 3.8 3.1e+02 2.6 0.2 2 23 598 619 597 619 0.80 15 18 0.0023 0.18 12.8 1.1 2 23 625 646 624 646 0.97 16 18 0.64 52 5.1 0.5 3 23 654 676 652 676 0.92 17 18 0.014 1.1 10.3 0.2 1 23 712 734 712 734 0.97 18 18 0.17 14 6.9 2.0 1 23 740 763 740 763 0.96
Sequence Information
- Coding Sequence
- atgtcactaAAAGAAGAGAAGATAGAGATAGAAGATATTAAAACTGAAAAAGATGATGAAAATAGAAAGGACCCGACATCATTCTTACCAGATGAGCCAATGACGTatgaaataaaagcaaaaaagaagaaaaaaaagaaaaaacaagaaGACCCTTTTAAAGATATAGAAGAAAAAGTATCTTTGCCAATTACTACTGTATTCGATCCAGCGGTAGAAGTAGAAGAACCTAAGCAGGTCTTAGATCCAGAAGTTAATATAAAAGTTGAGAATATAGAAGTTGAGCTGGACTTTAATGATTTTGCAAACGACAATGGGTTAATGTTGGAAGGTCCTCAAAGTGAAGATAGTCAAGAACCAGCAGTTAAAATCGAAGAACAAAATCATGAAGCAGTCTTGCTTACATTCGAAAGCATTATCACTGATAAAAGTGTTCTAGGCTTCGGTCCTATTGCACCGGCACCTAATTATGTGTGCAAAGTTTGCCATTTAGTCTTTCAATCCACAAAAACTTTAAGGATGCATCAAAAAAGAAAACACAAAATATTCAGAaaagcatttaaatatatttgccaTTATTGTGCAATGTCGTACGAGCAAAAGAACAGTTTGGTTGCTCATATTAAAAGGAAGCATGGGCCGGATTCAGCGAATGATGATGGGGAAGAAAGAACTTGTGATGTGTGTGCATTGGTTTTTAAAGGAATGACTAGATTACGTATGCATATGAGAAGAAAACACGGTTCCTTCGAAGAGTCGTTCAAGCACATATGTCAGGAATGCGGGTTAACGTATGACAAATACCGAAGTTTAATCGTCCACGTACAAAGAAAACATTCTAATGAGAAAAAACCAGATTTGGACCAGTGGTACAATTGTCCGTTTTGCCCAAAAGTGTTTACGAAACGCGAAACTTACGCACGACACGTTCAAAGGAAGCATAGAGTCGATGACGAAGATGATCAGAAACAAGAGGAGCCGCATAGTTTACtcgaaaatttcaaaaatgaagCCACAGGCGAAATCACATGTAAAGAATGTCCATTAGTCTTTTCGTCGctcaattatttaaagttacatatgagAAGGAAGCACAATGCGTTAAAAGAAGATTTTCGATTGAAATGCAGGATTTGTAATCTATCCTACGATAAGATTGAGAGCTTAAAACGGCATATTCGGCGGAAACACGACAAGGCGTCGTATTGTGACGTTTGCGATAAGCAATTCGAAACGAGAGAGATGTATCTCAGCCATACACACAAAAGAATGATACAAGAATGTCATATCTGCGGCCTAATATTCGCTTCACAAGGCGGTCTGTGCAAACATTTGCGATGTACGCACAAAATACAATCACCCAAAACGATTATGTGCACTCTTTGCAATGAAACTTTCCACGATAAGCGACAGTTGAAACCCCATTACTTAAAAGTTCACCTAAAAGTGTCGTACACGTGTGCATTTtgtaagaaagtttttaaagcCAAGGAGAGTTACAGGCGACATGTTCTTCTCAAACATCCGtcaaataatcaaaaattaaacGAGCAACAATGTGACCAATGTCCAGAGAAGTTTCCAGATGAATTCGAACTATGTCGCCACATCAATATAGCCCATGGAAAAATGCACGATGGCGAAATGGGACCTGTATCATTGATAGAAATAAAGAAGGAAGAGGTTGATATACCAGACACGTTCCAATGCTCAAAATGCCCAGAGAACTATGCAAGTTGGGAACAACTAAAGTTGCATTTCGAACAAAACCATCAAATGGTTTCCCAAACACAATGTCAAGTTTGCGGGGAAATGGTTCCCGGGAATGAATTAGAGAAACACTTTAAGAGTTTACACACAAATACGTCAGTTCGATGCAAATATTGCGAATTTGAAACGTCCAACCGTGCGAGTATGACTCAACATATGTTGCGACACAAAAACGCCGTTACTCTCAACTGTGATTTCCCTGGTTGTAAATACAAAACTTATTATGAAGGTGCTATGGAAAAACATAAAAGGAAACATCGGGATCAAGGCGTGAAACTCCAGTGCACGCAATGTCCTTTCCAAacgatgaataaatatatattgaaataccATGAAGAGGCCCATGTCACTGGGAAGAAGAGGTACTCCTGTGACCAGTGCGATTATGCGACAATTTTACCAGCTAATTTAGTTCAGCACAAATATAAGCACTCTTCAGAAAAAAGGTTCAAATGTGAGGTGTGCCCTTTCGCTACAAAGTACAACACGTCGTTACGTTTCCACGTTAAGAAGAAACATTGTGATCTCCCAACATTCAGttaa
- Protein Sequence
- MSLKEEKIEIEDIKTEKDDENRKDPTSFLPDEPMTYEIKAKKKKKKKKQEDPFKDIEEKVSLPITTVFDPAVEVEEPKQVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEEQNHEAVLLTFESIITDKSVLGFGPIAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKIFRKAFKYICHYCAMSYEQKNSLVAHIKRKHGPDSANDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHICQECGLTYDKYRSLIVHVQRKHSNEKKPDLDQWYNCPFCPKVFTKRETYARHVQRKHRVDDEDDQKQEEPHSLLENFKNEATGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKASYCDVCDKQFETREMYLSHTHKRMIQECHICGLIFASQGGLCKHLRCTHKIQSPKTIMCTLCNETFHDKRQLKPHYLKVHLKVSYTCAFCKKVFKAKESYRRHVLLKHPSNNQKLNEQQCDQCPEKFPDEFELCRHINIAHGKMHDGEMGPVSLIEIKKEEVDIPDTFQCSKCPENYASWEQLKLHFEQNHQMVSQTQCQVCGEMVPGNELEKHFKSLHTNTSVRCKYCEFETSNRASMTQHMLRHKNAVTLNCDFPGCKYKTYYEGAMEKHKRKHRDQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00723358; iTF_00247423; iTF_00160064; iTF_00212805; iTF_00213793;
- 80% Identity
- -