Beup025824.1
Basic Information
- Insect
- Boloria euphrosyne
- Gene Symbol
- -
- Assembly
- GCA_951802675.2
- Location
- OX637897.1:1830643-1835222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0017 0.17 13.2 4.1 1 23 159 182 159 182 0.98 2 18 0.00037 0.036 15.3 1.5 1 23 191 214 191 214 0.97 3 18 0.03 2.9 9.3 0.8 2 23 227 249 227 249 0.97 4 18 0.0017 0.17 13.2 1.1 1 23 258 281 258 281 0.96 5 18 3.7e-05 0.0036 18.5 1.3 1 23 293 316 293 316 0.97 6 18 1.2e-05 0.0012 20.0 0.7 2 23 344 366 343 366 0.97 7 18 0.00039 0.038 15.2 1.3 2 23 376 398 375 398 0.96 8 18 0.015 1.5 10.2 0.9 2 20 403 421 402 423 0.92 9 18 0.0016 0.16 13.3 3.5 2 21 428 447 427 450 0.94 10 18 0.0021 0.21 12.9 0.4 2 23 459 481 458 481 0.94 11 18 0.00084 0.083 14.2 1.8 1 23 486 509 486 509 0.94 12 18 0.00023 0.023 15.9 0.6 2 23 520 542 519 542 0.96 13 18 0.00075 0.074 14.3 0.5 1 23 569 592 569 592 0.92 14 18 3.3 3.3e+02 2.9 0.2 2 23 599 620 598 620 0.74 15 18 0.0023 0.23 12.8 1.1 2 23 626 647 625 647 0.97 16 18 2 1.9e+02 3.6 0.5 3 23 655 677 653 677 0.91 17 18 0.05 5 8.6 0.2 1 23 713 735 713 735 0.97 18 18 0.18 17 6.9 2.0 1 23 741 764 741 764 0.96
Sequence Information
- Coding Sequence
- atgtcactAAAAGAAGATAAGATAGAGTTAGCAGATATTAAAGCAGAAAAAGAAGATGAAAATAGAAAGGATCCAACATCATTCTTACCAGATGAGCCAATGACATATGAAATAAAAgcgaaaaagaagaaaaaaaagaagaaacaaGAAGACCCATTTAAAGATATAGAAGAAAAAGTCTCTATGCCGGTTACTACTATTTATGAACCACTAGTAGAAGTAGAAGTAGAAGAACCTAAGCAGGTCTTAGATCCagaagtaaatataaaagttgaGAATATAGAAGTTGAGCTGGACTTTAATGATTTTGCAAACGACAATGGGTTAATGTTAGAAGGTCCTCAAAGTGAAGATAGTCAAGAACCAGCAGTCAAAATAGAAGAACAAAATCGTGAAGCGGTGCTTCTTACTTTTGAAAGTATTATCCCCGATAAAAGTGTTTTAGGCTTCGGTCCCATCGCACCGGCACCTAACTATGTATGCAAAGTTTGTCATCTAGTCTTTCAATCCACAAAAACTTTAAGAATGCATCAGAAAAGAAAACACAAAGTATTTAGAAAATCATTCCAGTATATATGCCATTATTGTGCAATGTCGTACGAGCAGAAGAACAGTTTGGTTGCTCATATTAAAAGAAAGCATGGTCCAGATTCGGCGAATGATGATGGGGAAGAGAGAACTTGTGATGTATGTGCGTTGGTATTCAAAGGAATGACTAGATTGCGCATGCATATGAGAAGAAAACATGGTTCCTTCGAAGAGTCGTTCAAACATGTTTGTCAAGATTGCGGCCTAACATATGACAAATATAGAAGTCTAATAGTCCACGTACAACGAAAGCATTCGAATGAGAAAAAGCCAGATTTGAATCAGTGGTACAATTGTCCGTTTTGCCCTAAAGTGTTTACGAAACGTGAAACTTACGCACGACACGTTCAGAGAAAGCATAGAGTCAGTGATGAAGATGATCAGAAACAAGAGGAGACGCTTTTACtcgaaaattacaaaaatgagGCCACAGGCGAAATAACTTGTAAAGAATGTCCATTAGTCTTTTCATCGCTcaattatttaaagttacatatgaGAAGAAAGCACAACGCGTTAAAAGAAGATTTTCGATTGAAATGCAGGATTTGCAATCTATCCTACGATAAGATTGAGAGTTTAAAACGTCATATTCGGCGGAAACATGACAAGGCGTCCTATTGTGACGTGTGCGATAAGCAATTCGAAACGAGAGAAATGTATCTCAACCATACTCACAAAAGAATGATACAAGAATGCCACATCTGTGGTCTGATATTCGCTTCACAAGGCGGTCTGTGCAAACATTTGCGATGTACACACAAAATCACATCTCCCAAAACGATAGTGTGCACTCTGTGCAATGAGACTTTCAATGATAAACGACAGTTAAAACCCCATTATTTAAAAGTTCACCTAAAAGTTTCGTACACGTGTGCATTTTGTAAGAAAGTTTTCAAAGCCAAGGAGAGTTATAGGCGACATGTTCTTCTCAAACATCCGACGAATAATCCCAAAACAAACGAGCAACAATGTGACCAATGCCCAGAGAAGTTTCCAGACGAATTTGAATTGTGCCGTCACATCAAATTAGCCCATGGGAATGTGCAAGGAGGCGAAATAGGACCTGTATCATTGATTGAAATAAAGAAGGAAGAGGTTGATATACCAGAAATGTTCCAATGCTCAAAATGCCCAGAGAACTATGCAAGTTGGGAACAACTGAAATTACATTTCGAACAAAACCATCAAATGGTTACCGAAACCCAATGTCAAATTTGCGGAGAAATGGTTCCTGGGAACGAATTAGAAAAGCACTTTAAGAATTTGCACACAAATACGTCAGTTCGGTGCAAATATTGTGAGTTCGAAACGTCCAACCGTGCGAGTATGACTCAACACATGTTGCGACATAAGAACGCAGCTACCCTTAACTGTGATTTCCCTGGTTGTAAATACAAAACTTATTACGAAGGTGCTATGGATAAACATAGAAGGAAACATCGAGATCAAGGTGTGAAACTTCAGTGCAGCCAATGTCCTTTCCAaactatgaataaatatatattaaaatatcatgaaGAAGCCCACATCACTGGGAAGAAAAGATATTCTTGCGATCAGTGCGAGTATGCGACAATTTTGCCAGCTAATTTAGTTCAGCACAAATATAAGCATTCTGCAGAAAAAAGGTTCAAATGTGAGGTGTGCCCGTTCGCTACAAAGTACAACACGTCTTTACGCTTCCACGTTAAGAAGAAACATTGTGATCTCCCAACATTCAGTTAa
- Protein Sequence
- MSLKEDKIELADIKAEKEDENRKDPTSFLPDEPMTYEIKAKKKKKKKKQEDPFKDIEEKVSMPVTTIYEPLVEVEVEEPKQVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEEQNREAVLLTFESIIPDKSVLGFGPIAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFQYICHYCAMSYEQKNSLVAHIKRKHGPDSANDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCQDCGLTYDKYRSLIVHVQRKHSNEKKPDLNQWYNCPFCPKVFTKRETYARHVQRKHRVSDEDDQKQEETLLLENYKNEATGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKASYCDVCDKQFETREMYLNHTHKRMIQECHICGLIFASQGGLCKHLRCTHKITSPKTIVCTLCNETFNDKRQLKPHYLKVHLKVSYTCAFCKKVFKAKESYRRHVLLKHPTNNPKTNEQQCDQCPEKFPDEFELCRHIKLAHGNVQGGEIGPVSLIEIKKEEVDIPEMFQCSKCPENYASWEQLKLHFEQNHQMVTETQCQICGEMVPGNELEKHFKNLHTNTSVRCKYCEFETSNRASMTQHMLRHKNAATLNCDFPGCKYKTYYEGAMDKHRRKHRDQGVKLQCSQCPFQTMNKYILKYHEEAHITGKKRYSCDQCEYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00248331;
- 80% Identity
- -