Bhec001813.1
Basic Information
- Insect
- Brenthis hecate
- Gene Symbol
- -
- Assembly
- GCA_951806755.1
- Location
- OX638250.1:945700-949796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.9 3.1e+02 2.6 0.1 3 23 95 116 93 116 0.90 2 18 7.6e-05 0.0061 17.4 0.8 2 23 186 207 185 207 0.97 3 18 0.00033 0.026 15.4 0.0 1 23 211 233 211 233 0.98 4 18 0.00031 0.025 15.5 1.2 1 23 238 261 238 261 0.97 5 18 2.2 1.7e+02 3.4 0.8 2 23 269 291 269 291 0.90 6 18 2.5e-06 0.0002 22.1 1.7 2 23 299 321 298 321 0.96 7 18 8e-06 0.00064 20.5 0.8 1 23 327 349 327 349 0.98 8 18 4.3e-06 0.00035 21.3 3.1 1 23 355 377 355 377 0.98 9 18 0.0021 0.17 12.9 0.8 1 23 428 451 428 451 0.90 10 18 0.028 2.2 9.4 0.1 2 23 478 500 477 500 0.97 11 18 0.62 50 5.1 2.4 2 23 523 544 522 544 0.96 12 18 0.24 19 6.4 1.9 5 23 551 569 545 569 0.92 13 18 0.0012 0.093 13.7 1.1 1 23 574 597 574 597 0.94 14 18 0.13 10 7.3 0.2 2 23 605 627 605 627 0.95 15 18 0.00011 0.0092 16.9 6.5 2 23 635 656 635 657 0.95 16 18 0.011 0.85 10.7 3.3 1 23 663 685 663 685 0.97 17 18 2.8e-05 0.0023 18.8 4.2 1 23 691 713 691 713 0.99 18 18 1.8e-05 0.0014 19.4 5.1 1 23 719 742 719 742 0.98
Sequence Information
- Coding Sequence
- ATGATACCGTTCAAATTTGAAACGTCTTCCTTACAATGTTTCATATGTTCAAGTTCTCGACAGCAAATAGTCATCGTATCTGGAGAAAAAGCACAGGAAATGCTTCAAAACCTACAACAAACCAATGATAAAACGTCTAAGAAGAAACGTAAAAGAACTAAAACAAGTATAGATGATGATAAATGTATGCAAGAAGTAGAAAAACATAGAAATAATATGCTTGAAATATTATTCCATTCCAATGCTACGCCAATTCGTTTTAAAGGAGATATAGGCTACGGTTGCTCTTTTTGTTCCGACCAATACCCAAAACCTGCTGACTTAAAGAGCCATACAATAGAAGTTCATGACgaagatagtattaaaaaagttattgcaGATATGCGAATTTACACAGTGAAGTTAGACGTAACAGCTTTGCACTGTGCGCTTTGTTCAACAGATATACCAACCATAGAAGAACTCATGGACCATCTAATCAATGACCATCAGCGTGTTATATACAcagatattaaaaatcatatggTGCCATTTAAGTTTGACGACGATCAACTGAAGTGTGCTATATGTTCCGAGAAATTTGCCAAATTTAGAAATTTAACAGAACATATGAATACACATTTCAGAAATTATGTGTGTGATGTGTGCGGCGCGGGGTTTGTTAATCGCGATATTCTCAGAAGTCATTTGAGGATTCATAAGACAGGCGATTTCACTTGcgatttttgtccaaaaacatTCAACACTCGTGTCAAGAAACAGTCCCATATAAACATTGTCCACAAACGATTGTACATGACGAGGAAGTGTGGCTACTGTAATGAACTGTTTGATGATTACAATAAGAAAAATGAtcatttagtaaaatttcatGGTGTCAATCTCGTTATCCTTAAATGCGAACTTTGTGACAAGACGTTCATcaatcaaaatcagtttagGCGGCACGTTAGAAAGGATCATCTGATGGAGAGGAATTACGAATGTGAAGTGTGCGATATGAAGTTCTTTAGTAGTGAGAATTTGCGAAAACATGTGCTAAAACACACGGGAGAGAGAGATTTTCATTGCAATGTATGTGCAAAATCATTTGCACGAAAATTTACTTTACAACAGCATATGCGAGTGCACTCCAAGGAACGTAAAACTTCAAGGACATCCCCGGATCGATACTTGGTCATAAGTGAATCGGATGACGAATTGACAAAACATCATCACAATATAAAAGAGGTTCTCCAATGTTCTAACACTACACCGATCCATGGTAAAAGTGACCTCGGATACCTGTGCTGCTACTGCACACAACAATTTCCAGATCCTGCagacttaaaaaaacatacaattgaTGTGCACAGAGATGCGCCTAAACCTACTTTCTTCCAAAAAAGGGATCTACAAAAATTTTACGTCAAAGTCGACATAACTGGATTACAATGTAATATATGCAGAACAAATATCGAAGATTTGGACAAATTGATCGATCATTTAAAAACTGAGCACGACAGGAAAATATATACGGATGTAAAGAACCATATGGTTCCATTTAAGTTTGATAGTGAAGaactaaaatgttttgtttgtgCAAACGTGTACACTAAGTTCAAGATGCTGCTAGAGCATATGCATAAGCATTGTAGGAATTTTATATGTGAATGTGGTGCCGGATTTTTCAATCGTAGATCGTATTTGAACCATCAAAAATCTCACGTTGTCGGTGAATTTAAATGTGATCAATGTGATAAAGTTTTTGATAATGCTCAAAAAAAGAATCAGCACTTTCGAGCTGTTCATATACACGCATATAAACTGAATAGATGTGGCTATTGCAATGAAAAATTTGCTGGTTATCGAACGAAAGCAGAACATCTTAGAATTGTACACGGTGTAGGATGTGAAACAGCTCAGTGCCAAGCGTGCGAAAAGAGTTTTTGTAACAAAGATTCCTTAAGGAAACATATAAAACGTCACCATTTGATGGAAAACCAACACCACTGCACTCTGTGTGAAATGACATTTTTTGCTAAGAAAAATTTGGCAGAGCACATGGTCACTCATACTAAAACTCGTAGTTTTCAATGTAAAGTTTGTTTTAAGAGATATGGACGGCAGCACACGTTGCGTGAACACATGCGTATTCATAATAATGATAGGCGTTTCAAATGTGAACATTGTGGGATGGCGTTTGTGCAAAAGTGTAGTTGGCGACGTCATATGCAGACTAAACATGATGAGCCAGTCTAA
- Protein Sequence
- MIPFKFETSSLQCFICSSSRQQIVIVSGEKAQEMLQNLQQTNDKTSKKKRKRTKTSIDDDKCMQEVEKHRNNMLEILFHSNATPIRFKGDIGYGCSFCSDQYPKPADLKSHTIEVHDEDSIKKVIADMRIYTVKLDVTALHCALCSTDIPTIEELMDHLINDHQRVIYTDIKNHMVPFKFDDDQLKCAICSEKFAKFRNLTEHMNTHFRNYVCDVCGAGFVNRDILRSHLRIHKTGDFTCDFCPKTFNTRVKKQSHINIVHKRLYMTRKCGYCNELFDDYNKKNDHLVKFHGVNLVILKCELCDKTFINQNQFRRHVRKDHLMERNYECEVCDMKFFSSENLRKHVLKHTGERDFHCNVCAKSFARKFTLQQHMRVHSKERKTSRTSPDRYLVISESDDELTKHHHNIKEVLQCSNTTPIHGKSDLGYLCCYCTQQFPDPADLKKHTIDVHRDAPKPTFFQKRDLQKFYVKVDITGLQCNICRTNIEDLDKLIDHLKTEHDRKIYTDVKNHMVPFKFDSEELKCFVCANVYTKFKMLLEHMHKHCRNFICECGAGFFNRRSYLNHQKSHVVGEFKCDQCDKVFDNAQKKNQHFRAVHIHAYKLNRCGYCNEKFAGYRTKAEHLRIVHGVGCETAQCQACEKSFCNKDSLRKHIKRHHLMENQHHCTLCEMTFFAKKNLAEHMVTHTKTRSFQCKVCFKRYGRQHTLREHMRIHNNDRRFKCEHCGMAFVQKCSWRRHMQTKHDEPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457411;
- 90% Identity
- -
- 80% Identity
- -