Basic Information

Insect: Brenthis daphne
Gene Symbol: -
Assembly: GCA_947093115.1
Location: OX352471.1:9473100-9481582[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.3 4.8e+02 1.9 0.0 6 23 130 147 128 147 0.90

2 16 0.019 1.5 9.8 0.2 3 23 155 175 154 175 0.96

3 16 0.0075 0.57 11.1 1.2 2 23 183 205 182 205 0.94

4 16 0.12 8.9 7.4 4.9 2 23 214 236 213 236 0.93

5 16 0.0099 0.76 10.7 4.6 1 23 241 263 241 263 0.95

6 16 0.19 14 6.7 0.0 3 23 315 335 314 335 0.97

7 16 0.0013 0.099 13.5 0.9 2 23 342 363 342 363 0.96

8 16 0.0034 0.26 12.2 5.0 3 23 371 392 370 392 0.97

9 16 0.0066 0.51 11.3 0.5 3 20 402 419 400 423 0.92

10 16 5.5e-05 0.0042 17.8 4.0 1 23 428 450 428 450 0.97

11 16 0.0073 0.56 11.2 0.9 2 23 457 479 456 479 0.94

12 16 0.023 1.8 9.6 0.9 2 20 485 503 484 505 0.91

13 16 1e-06 7.8e-05 23.3 0.9 2 23 510 531 509 531 0.96

14 16 0.00028 0.021 15.6 0.4 1 23 537 559 537 559 0.98

15 16 0.00021 0.016 16.0 1.7 2 23 566 587 566 587 0.98

16 16 7.8e-08 6e-06 26.8 0.4 1 23 593 615 593 615 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.3	4.8e+02	1.9	0.0	6	23	130	147	128	147	0.90
2	16	0.019	1.5	9.8	0.2	3	23	155	175	154	175	0.96
3	16	0.0075	0.57	11.1	1.2	2	23	183	205	182	205	0.94
4	16	0.12	8.9	7.4	4.9	2	23	214	236	213	236	0.93
5	16	0.0099	0.76	10.7	4.6	1	23	241	263	241	263	0.95
6	16	0.19	14	6.7	0.0	3	23	315	335	314	335	0.97
7	16	0.0013	0.099	13.5	0.9	2	23	342	363	342	363	0.96
8	16	0.0034	0.26	12.2	5.0	3	23	371	392	370	392	0.97
9	16	0.0066	0.51	11.3	0.5	3	20	402	419	400	423	0.92
10	16	5.5e-05	0.0042	17.8	4.0	1	23	428	450	428	450	0.97
11	16	0.0073	0.56	11.2	0.9	2	23	457	479	456	479	0.94
12	16	0.023	1.8	9.6	0.9	2	20	485	503	484	505	0.91
13	16	1e-06	7.8e-05	23.3	0.9	2	23	510	531	509	531	0.96
14	16	0.00028	0.021	15.6	0.4	1	23	537	559	537	559	0.98
15	16	0.00021	0.016	16.0	1.7	2	23	566	587	566	587	0.98
16	16	7.8e-08	6e-06	26.8	0.4	1	23	593	615	593	615	0.99

Sequence Information

Coding Sequence: ATGATCAAATGTAGAGCATGTCTTAAAACAGAAGAAAATCTTAAAATGTATCCATTAAATGACAAAATCATTGTATACTTTAATTTGCTCACTGAGATAAACGTAAAACTTAATGATAGTATGCCACAACAAATATGTGAATGCTGTCTTGATATGGTTAATTTGTTTATAGAATTTAGAGGTAAATGTATTTTGTCGAATTCTATTTTATTAGACAACAACATATATATACAGAATATTAAAGAGGAGAACAGAGAAAGCAAAACTGATAATGACAGTATTAAACAAGAAAAAAGTGAACTTCATAACAGTGATGGTGTTCATAGTGATGTTGACAGTAACTTCATATATGAGTTGGTGTTAAATGAAAAACAATTTGAAGGCCTCTGTATTAAAGAATTCAAAGAAAGAAATTCATTAGTAGAACACTTAGATATTCATAAAATTAATGGTGACAATATTTGTGACTTGTGTATGCAAAATTTCTCTGACTGGCAGGAATTATTTTCACATAGATTAATACATTTGTCCAATAAGAATGACAAAGTTTGTCATATATGTTTTACAAAGTTTGTATCTCCTGCATTTTTAGAATATCATTATAAAGAGCAACATTTGAATAAGGAGAATCCCATTCTACGCTGCTGTTCGTGTAAACAAAGTTACACTACTCCTCAGGAATTACAAGAGCATAAAGCAAGATGTCATGGAGAAGAATCATTTATCTGCAATTGCTGTTCAAAAATGTTTACAAACGAAAAACAACTTAAGCAGCATGTAACTAAACATACAGAGAGAAAGACTGTCGAAGATGTTATTGAAAACTCCAGCAAAAATATTGGTATTTTAGAAACAAACCATAAAGTATCTAATGAACAGAAGGAAAAAGACTTAAATGCGAAAAAAAGTAAAAATATAAAAAAATTGGAAAACAGATTACTTTGCGGGCTTTGTGAAACTATATATGAAAGTTTAGATTCTTTATTGGAACACTTGGATAGTCATAAGAATAACAGTGATAACACGTGCCGCGTGTGTGCGCAGACATTCACAGACTGGACACAGTTGTTTTCGCACAGATTACAACATTTACCTACGAAACAAAAAGCATGCCATATTTGCTTCAAAGGATTCCGATCACATGTATATTTGGAACACCATTACAATAAAATTCATTGCAACAATGAAAAGGCGATGGTTAACTGTTTGACCTGCAATAAAAGCTACAACACACCCATTAAATTACGAAAACATGTGTGGAGAAGTCATTCTAATAAAACCTTTATATGTGACTTTTGTTCAAGAACATATTGTCAAAAAGATCAACTGAGAAAGCATATAAAGGGACACATGGGCCGCGAGTCTCTTGAGTGTGACCAATGCGATTACTCTACTAAATATATTACAAATCTAAAGGAACACAAAATAAGGAAGCATACGCCGAAAAGAGTCTATTGCAAAGTGTGCTCTAGAGTATTTAGTGACCAACTCAAGCTCGACGCCCATAAGTGTAACGTACGATCGTTAATATGCTCCACATGCGGAAAAACGTTCAAAGGAAACAAACAGCTCACGCGGCACATGGCGTCGCACGAGAGCGTGGGGCGCTTCCAGTGCGCGCGCTGCCCGGCGCGCTACCGCTCGCGCTCGGCGCTGCGCGCGCACCGCGACCGCCACGACGGCGTGCGCGCGCGCCGCTGCCCGCATTGCCCCGCCGCCTTCTACTCCTTCTCCGTGCTCACCAAGCACAAGCGCACACACACAGGAATAAAACCATATGTTTGCAAAATTTGTCAAAAGGCATTCACTGGAAACAATAATTTAAAAGTCCACATGAGGGTCCATGGAGAATACTTAATCACGAAGAGAGTAACAAATAAATAA
Protein Sequence: MIKCRACLKTEENLKMYPLNDKIIVYFNLLTEINVKLNDSMPQQICECCLDMVNLFIEFRGKCILSNSILLDNNIYIQNIKEENRESKTDNDSIKQEKSELHNSDGVHSDVDSNFIYELVLNEKQFEGLCIKEFKERNSLVEHLDIHKINGDNICDLCMQNFSDWQELFSHRLIHLSNKNDKVCHICFTKFVSPAFLEYHYKEQHLNKENPILRCCSCKQSYTTPQELQEHKARCHGEESFICNCCSKMFTNEKQLKQHVTKHTERKTVEDVIENSSKNIGILETNHKVSNEQKEKDLNAKKSKNIKKLENRLLCGLCETIYESLDSLLEHLDSHKNNSDNTCRVCAQTFTDWTQLFSHRLQHLPTKQKACHICFKGFRSHVYLEHHYNKIHCNNEKAMVNCLTCNKSYNTPIKLRKHVWRSHSNKTFICDFCSRTYCQKDQLRKHIKGHMGRESLECDQCDYSTKYITNLKEHKIRKHTPKRVYCKVCSRVFSDQLKLDAHKCNVRSLICSTCGKTFKGNKQLTRHMASHESVGRFQCARCPARYRSRSALRAHRDRHDGVRARRCPHCPAAFYSFSVLTKHKRTHTGIKPYVCKICQKAFTGNNNLKVHMRVHGEYLITKRVTNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00723352;
90% Identity: -
80% Identity: -