Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010001522.1:66261-70747[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.34 1.1e+03 -0.3 0.0 26 46 156 176 146 182 0.87

2 12 0.37 1.2e+03 -0.4 0.0 23 44 181 202 177 210 0.82

3 12 0.025 79 3.3 0.5 6 45 227 269 222 277 0.73

4 12 0.0055 18 5.4 0.1 20 36 280 296 271 309 0.77

5 12 0.007 22 5.1 0.0 27 45 314 332 305 341 0.90

6 12 1.8 5.7e+03 -2.6 0.0 26 46 341 361 336 369 0.81

7 12 0.49 1.6e+03 -0.8 0.3 22 46 365 389 359 395 0.83

8 12 0.14 4.6e+02 0.9 0.1 21 53 392 424 383 425 0.82

9 12 0.0026 8.2 6.5 0.0 21 48 420 447 415 451 0.88

10 12 0.0016 5 7.2 0.1 22 46 449 473 446 479 0.93

11 12 0.0024 7.7 6.6 0.1 21 52 509 540 497 541 0.92

12 12 0.0003 0.96 9.5 0.1 26 48 572 594 557 598 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.34	1.1e+03	-0.3	0.0	26	46	156	176	146	182	0.87
2	12	0.37	1.2e+03	-0.4	0.0	23	44	181	202	177	210	0.82
3	12	0.025	79	3.3	0.5	6	45	227	269	222	277	0.73
4	12	0.0055	18	5.4	0.1	20	36	280	296	271	309	0.77
5	12	0.007	22	5.1	0.0	27	45	314	332	305	341	0.90
6	12	1.8	5.7e+03	-2.6	0.0	26	46	341	361	336	369	0.81
7	12	0.49	1.6e+03	-0.8	0.3	22	46	365	389	359	395	0.83
8	12	0.14	4.6e+02	0.9	0.1	21	53	392	424	383	425	0.82
9	12	0.0026	8.2	6.5	0.0	21	48	420	447	415	451	0.88
10	12	0.0016	5	7.2	0.1	22	46	449	473	446	479	0.93
11	12	0.0024	7.7	6.6	0.1	21	52	509	540	497	541	0.92
12	12	0.0003	0.96	9.5	0.1	26	48	572	594	557	598	0.86

Sequence Information

Coding Sequence: ATGATGGACGAAGAGGATTCAAATCAATCTGATGACCAATCGAAAAATGGAGATGATGACGAAGATTATGTGGAGGAACAGGATGATGAAGAGGAGGAGGAGGAAGACGACAATAACGAAGAAGAcggtgatgatgatgacgagGATGACAACCAATCCGATAATAAAACTGATGTGCTTAAAAGTGAAGACAAAAATGAGTCAAACGATGATACGAGCCTGATAACACCAAAAGACGAACCGGATCCTGATTCTGAATCAGATACGAAGCCCGAAGTCAAAGTCAAACCTGAACCAGCACCAGAACCAGAAGAGTCATCCGGATATGACATTTATAAGAATATGACCGATGAACAGCGACAAAAAGCTTTAAAGAACAATGAATGTTTTCTCTGTGAGAAACGGTTCGCTTCATTCACATCATTCAAGAAACATATGATTCGTCATACTGGTGTCAAGAACTATAAGTGTCACATATGTGATAAGGCTTTTGCGGAAGGGAAATACCTACGTGCTCATATGAACATTCACAGTGGACGAACTCCCTATACGTGTAAAGTCTGCGAAAAGAAATTTGCAAGTTCATCAAGTTTGCATGGCCATATGTTGATCCACACCGGTGAAAAACGGTACAAATGTGATATTTGCAATAAAGCCTTCACGGCGTCATCCACTCGGGGCAAGCACATGAAAATGGTTCACAATCCCGAAGAACGGGCTAACCGAAAGCCATCGGAACGGAGGTTCAAATGTGAAATTTGCGAGCAGGCATTCAGCcgaaaaatgaacttaaatGTGCACATGAAGAGTCACAGTACCTCTAGGGGTATACTGGGCCAAGACGATGAAACGGAAGAGTGCCCAATTTGCTTCAAAATTATCGCTAAGAATTCCAAATATCACATGAAGACCCATGAAAAAGGAGTGAAAGTCTACGAGTGTAAAGTGTGCGATGCCAAATTCAATCAATCGGAAAGTCTTCGGGCCCACATGTCTCATCACACGGGTATTAAGGATTTTGTGTGCAGTGTTTGCTCAAAGGCATTTAGTGTTTCATCGCGTCTGACAAAACATATGAGGATTCATACGGGCGAAAAAAGATTTGTCTGCGAAATTTGTCAGCGCGCTTTTACCGATTGTTCGGCATTACATCGCCATCGAAAGATTCACACCGCtgaaaagaatttcttatgCGAGATCTGCTCTAAAGCGTTTTCACAACCATCCAGTCTTCAACTTCATATGCGTGTTCACACAGGTGAAAAACCGCACGTTTGTAAAGTTTGCACCAAAGCGTTCCACGATAGTTCATCACTGTCCAAACACATGAACCTGCATCTTCCGGAGAAACCTTTCCAATGTCAAATTTGTCTGaagaaattcaatcaaaaatactGTCTGAAGAAGCACCTTGAAACGCATGAGAATGATCATCTCCTGAAAGATTTCGACGGAGTTTGtgaaatttgttccaaaaagtTCGGAACACCCAGTGCACTGAAAATTCATCAAGCTGTACATTCCACCGATAAGCCCCATCAATGTAGCTATTGCTTTAAAAAGTTccgtttgatacaaaatatgaaaactcACATCGGAAAAGTGCACATTGATAAGCCATATGAATGCAACATTTGCCAAAAGAAAGCCTTTGCAACCATGGAAAAATTGGAGGAACATCGAGAGAAACATCTGGCTGAAAAGAAGGTACTGCCGTGTGGCATATGCCATCAGACCTTCAAAGCACCGGGCAATCTGCGCAAACATTTAATGAAGCGTCACAATATCGAAAATGAATCGAAAGAACCAATGAACATCGAGCAGATGCCGAACCCAACCGTACCAATGCCACAGATGGTGATGCCACCGATGCCAATGAAAGTTGTGTCCAATAATAAGGCAATGAGTGACGTTCTGAATTTATCGCATTCGATATTCCAACGGCAGGGCCATCCGACCTGGCTTTAA
Protein Sequence: MMDEEDSNQSDDQSKNGDDDEDYVEEQDDEEEEEEDDNNEEDGDDDDEDDNQSDNKTDVLKSEDKNESNDDTSLITPKDEPDPDSESDTKPEVKVKPEPAPEPEESSGYDIYKNMTDEQRQKALKNNECFLCEKRFASFTSFKKHMIRHTGVKNYKCHICDKAFAEGKYLRAHMNIHSGRTPYTCKVCEKKFASSSSLHGHMLIHTGEKRYKCDICNKAFTASSTRGKHMKMVHNPEERANRKPSERRFKCEICEQAFSRKMNLNVHMKSHSTSRGILGQDDETEECPICFKIIAKNSKYHMKTHEKGVKVYECKVCDAKFNQSESLRAHMSHHTGIKDFVCSVCSKAFSVSSRLTKHMRIHTGEKRFVCEICQRAFTDCSALHRHRKIHTAEKNFLCEICSKAFSQPSSLQLHMRVHTGEKPHVCKVCTKAFHDSSSLSKHMNLHLPEKPFQCQICLKKFNQKYCLKKHLETHENDHLLKDFDGVCEICSKKFGTPSALKIHQAVHSTDKPHQCSYCFKKFRLIQNMKTHIGKVHIDKPYECNICQKKAFATMEKLEEHREKHLAEKKVLPCGICHQTFKAPGNLRKHLMKRHNIENESKEPMNIEQMPNPTVPMPQMVMPPMPMKVVSNNKAMSDVLNLSHSIFQRQGHPTWL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246529;
90% Identity: iTF_00246529;
80% Identity: iTF_00246529;