Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000568.1:541421-544263[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.2 2.6e+02 2.2 2.2 2 21 238 257 237 258 0.90

2 13 8.6 4.3e+02 1.5 0.3 2 23 268 290 268 290 0.92

3 13 0.00018 0.0093 16.2 4.7 1 21 293 313 293 315 0.95

4 13 0.015 0.74 10.2 4.5 2 23 319 340 318 340 0.95

5 13 0.001 0.053 13.9 1.0 1 23 345 368 345 368 0.96

6 13 5.6e-05 0.0028 17.8 3.1 1 23 373 395 373 395 0.99

7 13 0.012 0.59 10.6 9.5 1 23 401 423 401 423 0.98

8 13 4.5e-05 0.0023 18.1 0.1 1 23 429 451 429 451 0.95

9 13 0.29 15 6.2 2.1 2 23 470 491 469 491 0.93

10 13 0.00079 0.04 14.2 0.2 1 23 504 526 504 526 0.98

11 13 0.00045 0.023 15.0 2.4 1 23 532 555 532 555 0.92

12 13 2.7 1.4e+02 3.1 0.6 2 23 562 584 561 584 0.89

13 13 2.1e-05 0.0011 19.2 0.8 1 23 590 613 590 613 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.2	2.6e+02	2.2	2.2	2	21	238	257	237	258	0.90
2	13	8.6	4.3e+02	1.5	0.3	2	23	268	290	268	290	0.92
3	13	0.00018	0.0093	16.2	4.7	1	21	293	313	293	315	0.95
4	13	0.015	0.74	10.2	4.5	2	23	319	340	318	340	0.95
5	13	0.001	0.053	13.9	1.0	1	23	345	368	345	368	0.96
6	13	5.6e-05	0.0028	17.8	3.1	1	23	373	395	373	395	0.99
7	13	0.012	0.59	10.6	9.5	1	23	401	423	401	423	0.98
8	13	4.5e-05	0.0023	18.1	0.1	1	23	429	451	429	451	0.95
9	13	0.29	15	6.2	2.1	2	23	470	491	469	491	0.93
10	13	0.00079	0.04	14.2	0.2	1	23	504	526	504	526	0.98
11	13	0.00045	0.023	15.0	2.4	1	23	532	555	532	555	0.92
12	13	2.7	1.4e+02	3.1	0.6	2	23	562	584	561	584	0.89
13	13	2.1e-05	0.0011	19.2	0.8	1	23	590	613	590	613	0.96

Sequence Information

Coding Sequence: ATGTTCGGAGGAACGCTATATCAACCAATCAAGCCCGAAATGTCTAAAATGAACAGCGAATACGAAATTACGGAGCTGTTCATAGAGCCGATCGTCGTAAATGTTCTACGAGTGTTAGCTGCAAACGGAACCGTAACCCAACTGGCCACGAATATTCCTCTAGAAGAAATTTGTCATACCGACGACGTGCTGGAATTAACTCAAATGAATCACCTACCGTTCGATGAAGCGCTCTCAAAGTCAGTTTTCTTGAACGAAGTGTGCAAGGTTTGTCTGAAAGACCTCACCGATTCACCGGATAAGATTCTGTTCCACGATGATTTCGGACAAGTCAGCGCGGAAGTCGTGAATATTAGTGCCGCACTTGAGTCAATGAATGTCGAGATTACGAATGACGTCAGCGGCCCAAAGCAGATGTGCATCGAGTGTTTTAATATCTTTTCGAAGatgacgctgttccagcagatTTGTAAGCGATCCAAACGTGCACTTGCCAACATCAATGAATTTGTCGCCCAGCAGCAATCAAATGTGAAAGTGGAAGTAAAGGACACCGTTCCACTTTTGTGTTATTCACCCGTTGACATTGTTGACATAAAGGAGGAACAGGATGAACTGCCAGATCCAGAGTTAGTTAATCAGCAACTAATCGAAATGGACGATAGTGCACCAGCAGTCAGTTCGAACGATCCGGGCGTGCCCAAATCATGCATTTGTAACCGATGTGGAGGAAATTTCGACCATCGAAATTCGGTTGTCTACCATAAACGATACGAGCTGTGTGTCAAGGCCATCAATCCTCAGTGCAGATTTTGTGAAGCAACATTACCAACCGTCATGGATTTGGATCATCACTTGGAGAACGCCCACACTGGCTATCCGTGTACCAAATGCGACAAATCATTTACCACAGTGGCAAAGTTCAACAAACATCAACGGTGTCACAGAGTGCTCATTTGCGACTTTTGTgggcaaattttcttttcgaaacgGCACATCCGCAAGCACTTGCAACATCACGTTTTTAATACGTTTGCTTGCTTGTTCTGTACGCAGACGTTTAAAACGCCGAAAAGTCTGGGAGTGCATAAGCGACGAGTTCATCCCGACGAATTGTACAAATGTCCACACTGTCCCAAAGAATTCAAACTGAAAGACAGGTACCGCGTCCACCTGATGAAACACAATCCAGACAAGCCTCACAAATGCACATTTTGCCCGTCACAATTCGTACATCGGCACCATTTGGAGAACCATGTTCGAACGCACACAAAAGAGACTCCGTTCCTATGTAACTTTTGCGGAAAAGCATTTCGTGGTGAAGTCGCTCTGCGAGCCCATTTATCCACTCATGACTCGGTAGCATATCCGTACCGTTATCGCTATCGCAAACCGCCGAAAATTCTGAATTGTAAGCTCTGCGACTTCGTTTCAACGTACGGCAACATGAAAAAGCACATGATGCATGAGCACGGTCATGGCAGTGGTCGCACTTCCAAGGACTTCGAATACTCGTGTCTCGTTTGCGAAAAGAAATTTCGACTCGCTGCCAGCTTGGACAATCATGTGAAAATTCACGACGAGGAGCGTAATTTTCATTGTACGTACTGCAAACAATCGTTCCGGAAAGCCAATTATCTTCGACTGCATATCGACGGTGtacatttgaacaaaaaacCGAACAAATGTGATCAGTGCAATGCCGCTTATCTGATATCAAACGATCTGAGACGACATAAATTGCAACGACACTCCACTGAGCGACCGTTTGAATGTTACTACTGTAGTAAGCGATTCGCGATGGCCTCGTCGCTGAAAGTGCACATCAAACTGCAGCATCGTGTGACAATAAGCGATTCATAA
Protein Sequence: MFGGTLYQPIKPEMSKMNSEYEITELFIEPIVVNVLRVLAANGTVTQLATNIPLEEICHTDDVLELTQMNHLPFDEALSKSVFLNEVCKVCLKDLTDSPDKILFHDDFGQVSAEVVNISAALESMNVEITNDVSGPKQMCIECFNIFSKMTLFQQICKRSKRALANINEFVAQQQSNVKVEVKDTVPLLCYSPVDIVDIKEEQDELPDPELVNQQLIEMDDSAPAVSSNDPGVPKSCICNRCGGNFDHRNSVVYHKRYELCVKAINPQCRFCEATLPTVMDLDHHLENAHTGYPCTKCDKSFTTVAKFNKHQRCHRVLICDFCGQIFFSKRHIRKHLQHHVFNTFACLFCTQTFKTPKSLGVHKRRVHPDELYKCPHCPKEFKLKDRYRVHLMKHNPDKPHKCTFCPSQFVHRHHLENHVRTHTKETPFLCNFCGKAFRGEVALRAHLSTHDSVAYPYRYRYRKPPKILNCKLCDFVSTYGNMKKHMMHEHGHGSGRTSKDFEYSCLVCEKKFRLAASLDNHVKIHDEERNFHCTYCKQSFRKANYLRLHIDGVHLNKKPNKCDQCNAAYLISNDLRRHKLQRHSTERPFECYYCSKRFAMASSLKVHIKLQHRVTISDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245764;
90% Identity: iTF_00245764;
80% Identity: -