Bcop002619.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:1190193-1193120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.26 11 6.5 0.9 1 21 273 293 273 294 0.92 2 13 8.7 3.8e+02 1.7 0.6 2 23 304 326 304 326 0.93 3 13 0.00012 0.0051 17.1 4.3 1 21 329 349 329 351 0.95 4 13 0.0035 0.15 12.4 3.3 2 23 355 376 354 376 0.95 5 13 0.0011 0.049 14.0 0.9 1 23 381 404 381 404 0.96 6 13 9.5e-05 0.0041 17.4 3.0 1 23 409 431 409 431 0.99 7 13 0.015 0.64 10.5 9.5 1 23 437 459 437 459 0.98 8 13 0.00022 0.0096 16.2 0.2 1 23 465 487 465 487 0.95 9 13 0.072 3.1 8.3 2.3 3 23 507 527 505 527 0.94 10 13 0.00022 0.0096 16.2 0.1 1 23 540 562 540 562 0.98 11 13 0.00057 0.025 14.9 2.4 1 23 568 591 568 591 0.92 12 13 1.3 58 4.3 0.7 2 23 598 620 597 620 0.92 13 13 2.7e-05 0.0012 19.1 0.6 1 23 626 649 626 649 0.96
Sequence Information
- Coding Sequence
- ATGAAGCGCAGTTTGTTACCATGTGCATTGCCTGCGAAAGACGTAAGTGTCAGAGAACATGACTACAGCATCAGAGTGACAAGAGTCGCTGTATCGAAGAATAAGAAACATGTTCGGAGGAACGCTACTTCAAACGATCAACCCGACATGTCTCAAATGAACAACGAATACGAAATTACGGAGCTCTTCATAGAGCCGATCGTCGTAAATGTTATACGAGTGTTAGCTGCAAACGGAACCATAACCCAACTGGCCACGAATATTCCTCTAGAAGAAATTTGTCATACCGACGATGTGCTGGAACTAACGCCAATGGATCACCTACCGCTCGATGAAGCGCTCTCAAAGTCAGTTTTCTTGAACGAAGTGTGCAAGGTTTGTCTGAAAGACCTCACCGATTCACCGGATAAGATTCTGTTTCACGATGATTTCGGACAAGTTAGCGGAGAACTCGTGAACATTAGTGCCGCACTTGAGTCAATGAATGTCGAGATTACAAATGACACCAGCGGACCGAAGCAGATCTGCATCGAGTGTTTTAATATCTTTTCGAAGATGACGCTGTTCCAGCAGATCTGTAAACGATCCAAATGTGCACTTGCCAACATCAGTGAATTTGTCGTCCAGCGACAATCAAATGTGAAAGTTGAAGCGAGGGACGACGTTGCACTTATGTGTTATTCACCCGTTGACATTGTTGACATAAAGGAGGAACAGGATGAACTGCCAGATCCAGAGTTAGTTAATCAGCAATTAATCGAAATGGACGATAGTGTACCAGCAGTCAATTCGAACGATCCGGGCGTGCCCAAATCATTCATTTGCAACCGATGTGGAGGAAGTTTCGACCATCGAAATTCGGTTGTCTACCACAAACGATACGAGCTGTGTGTCAAGGGCATCAATCCTCAGTGCAGATTTTGTAAAGCAACATTACCGACAGTTATGGATTTGGATCATCACTTGGAGAACGACCACACTGCCTATCCGTGTACCAAATGCGACAAATCATTTACCACAGTGACAAAGCTCAACAACCATCAACGGTGTCACAAAGTGCTCATTTGCGACTTTTGTGGACAAACGTTCTTTTCGAAACGACAGATTCGCAAGCACTTGCAACATCACGTTTTTAATACGTTTGCTTGCTTGTTCTGTACGCAGTCGTTTAAAACGCCGAAGAGTCTCGGAGTGCATAAGCGACGAGTTCATCCCGATGAATTGTACAGATGTCCACACTGTCCCAAAGAATTCAAACTGAAAGACAGATACCGCGTCCACCTGATGAAACACAATCCAGACAAACCTCACAAATGCACATTTTGCCCGTCACAGTTCGTACATCGACACCATTTGGAGAATCATGTTCGAACTCACACAAAAGAGACTCCGTTCCTGTGTAATTTTTGCGGAAAAGCGTTTCGTGGTGATGTCGCTCTGCGAGCCCATTTATCCACTCATGACTCGGTAGCATATCCGTACCGGTATCGCTATCGCAAACCgccgaaaattcaaaattgtaaacTCTGCGACTTCGTTTCAACGTATGGCAATCTTAAGAAACACATGATGCATGAGCACGGTCAAGGCAGTGGTCGCATTTCTAGGGAATTCGAATACTCGTGCCCCGTTTGCGAAAAGCAATTTCGACTCGCTGCCAGCTTAGACAATCATGTGAAAATTCATAATGAGGTGCGTAATTTCCATTGTACGTACTGCAAACAATCGTTCAGGAAAGCCAATTATCTTCGACTGCATATCGACGGTGttcatttgaacaaaaaaccGAACAAATGCGATCAGTGCAATGCCGCTTATTTGATGTCAAACGATCTGAGACGGCATAAATTGCAACGACATTCCACGGAGCGACCGTTCGAATGTTACTACTGTAGTAAGCGATTCGCCCTGGCCTCTGCATTAAAAGTCCACATGAAACTGCAGCATCGCGAGACAATAAGCGATTCAAAAAACTAA
- Protein Sequence
- MKRSLLPCALPAKDVSVREHDYSIRVTRVAVSKNKKHVRRNATSNDQPDMSQMNNEYEITELFIEPIVVNVIRVLAANGTITQLATNIPLEEICHTDDVLELTPMDHLPLDEALSKSVFLNEVCKVCLKDLTDSPDKILFHDDFGQVSGELVNISAALESMNVEITNDTSGPKQICIECFNIFSKMTLFQQICKRSKCALANISEFVVQRQSNVKVEARDDVALMCYSPVDIVDIKEEQDELPDPELVNQQLIEMDDSVPAVNSNDPGVPKSFICNRCGGSFDHRNSVVYHKRYELCVKGINPQCRFCKATLPTVMDLDHHLENDHTAYPCTKCDKSFTTVTKLNNHQRCHKVLICDFCGQTFFSKRQIRKHLQHHVFNTFACLFCTQSFKTPKSLGVHKRRVHPDELYRCPHCPKEFKLKDRYRVHLMKHNPDKPHKCTFCPSQFVHRHHLENHVRTHTKETPFLCNFCGKAFRGDVALRAHLSTHDSVAYPYRYRYRKPPKIQNCKLCDFVSTYGNLKKHMMHEHGQGSGRISREFEYSCPVCEKQFRLAASLDNHVKIHNEVRNFHCTYCKQSFRKANYLRLHIDGVHLNKKPNKCDQCNAAYLMSNDLRRHKLQRHSTERPFECYYCSKRFALASALKVHMKLQHRETISDSKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246673;
- 90% Identity
- iTF_00246673;
- 80% Identity
- -