Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010001336.1:707531-710154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.18 9.1 6.8 0.5 1 23 35 57 35 57 0.94

2 14 1.2 63 4.2 0.2 1 21 147 172 147 173 0.77

3 14 0.04 2 8.9 2.7 2 23 176 198 175 198 0.97

4 14 0.021 1.1 9.8 7.8 1 23 269 291 269 291 0.99

5 14 0.00093 0.047 14.0 2.5 1 23 300 323 300 323 0.93

6 14 0.14 6.9 7.2 5.6 1 23 389 412 389 412 0.95

7 14 0.0033 0.17 12.3 0.2 2 23 419 440 418 440 0.96

8 14 0.01 0.52 10.7 1.1 1 23 479 502 479 502 0.97

9 14 0.0019 0.096 13.0 0.1 1 23 517 539 517 539 0.97

10 14 1.9e-05 0.00097 19.3 1.9 1 23 545 567 545 567 0.96

11 14 1.1e-06 5.8e-05 23.2 1.2 1 23 573 595 573 595 0.98

12 14 4.3e-07 2.2e-05 24.5 0.1 1 23 600 622 600 622 0.98

13 14 7.8e-07 3.9e-05 23.7 1.5 1 23 628 650 628 650 0.98

14 14 0.026 1.3 9.4 5.2 1 23 655 678 655 678 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.18	9.1	6.8	0.5	1	23	35	57	35	57	0.94
2	14	1.2	63	4.2	0.2	1	21	147	172	147	173	0.77
3	14	0.04	2	8.9	2.7	2	23	176	198	175	198	0.97
4	14	0.021	1.1	9.8	7.8	1	23	269	291	269	291	0.99
5	14	0.00093	0.047	14.0	2.5	1	23	300	323	300	323	0.93
6	14	0.14	6.9	7.2	5.6	1	23	389	412	389	412	0.95
7	14	0.0033	0.17	12.3	0.2	2	23	419	440	418	440	0.96
8	14	0.01	0.52	10.7	1.1	1	23	479	502	479	502	0.97
9	14	0.0019	0.096	13.0	0.1	1	23	517	539	517	539	0.97
10	14	1.9e-05	0.00097	19.3	1.9	1	23	545	567	545	567	0.96
11	14	1.1e-06	5.8e-05	23.2	1.2	1	23	573	595	573	595	0.98
12	14	4.3e-07	2.2e-05	24.5	0.1	1	23	600	622	600	622	0.98
13	14	7.8e-07	3.9e-05	23.7	1.5	1	23	628	650	628	650	0.98
14	14	0.026	1.3	9.4	5.2	1	23	655	678	655	678	0.97

Sequence Information

Coding Sequence: atggACAATAACACGGGCGTAAATTGGTCCAGCAGCACCGTAACCATGGAAGGACTACACAAATCTGCCATAATTTACCGCAAAAATTCGGCCTGTTTCATCTATGTTTGCTACCACTGTGGTAACATGTTTGACGAAGTCACTGAAACTCTGCAGCACATCGAATCTCACTTTCAACTGGCCAATGTTGTGATTGGACAATTAGCTGAGGATGAGAAGGGCGAGAATTTGGGTGATTGTTTTGCGGTGACAAGAACAAACTCTGTGATGGAACCATTCGCTGAGGATAGCAAGGACGACAATTTGGGCGGTGATTGTTTTGCGATAACATCAGTGAACTCTACCGTTGATATTAAGGTGGAAGCTATGGACCATAGTGATGGGGACGGAGAGTCCTTGCTTAAATCGGAACCACAGGCTAACCAAGTCAGACGAGAATTTCGTTGTAAAATTTGCAATTCAATTGAATCgtcaaaattttccattcgCATCCATGCTTTGATTCAACACATCCGGGAACCGATGAAATGTACTCACTGCAACAGCACAACCTTTCAACGACTCGACGATTTTGAGAATCATTTAAGAGCTCACATAGCTGAGGGTGAAGTGAATTGGAAAAGTGTGACCGACGGCATTCAGTCAACAGTGGACGTTGACTGGTCTGCATACTATGAAGCTATGCTGcggcaagacaacaaaatcaaGGAAGAAATCGCTAGAACAAGTGAATCGCCTCACGAACTTACAATCGCCAAAAGACCTCGACGGAAACAGACTAGAAGGCGAGTGTATTCCCGTCCGTATCGCTGCCACAAGTGCTCTCAAACGTGTAGATACATGAACGCTTTACGAAGTCACTACAACACACATGTCGATGAAGATCTGTTACGTGCTTACAGATGCAAAGAATGTGACTGCTACTACAAGAACGCGTACTCGCTTCGGGTTCACGTTCTCGACACGCATCGAATGGTAAAGAGATTGAGCTGTAAGGGCTGCGCTTTGGAATTTAATTGTTCTCACGAGAAGCAGTTCGAAGAACATTTACAGCTGCACAATGGAAGCGACAAAAAACTATGGCCGGACATACGAGACGGAATCGATCATGTGCAGGAAGACTTCACACAATATGAGGAAACCACTTCGTTTGCCGACGAAGAGCATTGCTGCGAATTCTGTACTCAAAGATTTTACCTAAAATCGAACTTTGATGTGCACATGACAAGTGTCCATTCTGGTCAACGTCGACTGCAGTGTGGCCAGTGTGATGCGATATTTACAACGCCTAAGTTCTATTTCGCTCATCAATTGGAACATCAACGAGTCGGCGCTACCATTGTCGAACGAGACGACAATGTTCTTCTGGCCAATCTGGACGCTTGTATCGATGAACGAATTATCTACGACGAAGATGAACTCAATCAACGATTATACCGTTGTTTGATCTGTAACACCGCATTCGACATACATTACGACATTCGATCACATATCCGGGAACGACACGTCTACAAGATGTTTCCACCGCCGGTGGAACCGAAAAAGGAATTCATTTGTGATTTGTGTGGCATGAGATTGAAGACCAAAGCGGCCGTAAAGAATCACTTGCTGATCCATACGAATACCAAGAAACATCCGTGCACGATTTGTGGGAAAATGTTCCGTCAGAATTCGGATAGGCGAATTCACGAACGTCAGCACACTGGGGAGAAACCTTTCCAATGTCACCTTTGCGGCAAGGCATTCATTTCCAACGGCCTGTTAACCGCACACAAAAAATCTCACGACGACACAACGTATCCGTGTCCGATTTGTGGACGCGTTTTCAATCTTCCATCCGGCTACCGGAAACACATACAAACTCATCGTCAGGATCGGTCGTTCAAATGCACAGTATGTCCGAAATCGTTCAACACCAAGATCTACTTGAGCAAACACATGTCCATTCACTCTGACAAGCAATATCAGTGCCGGTTCTGTGACAGTAAATTTAGCACCAGCGATGGTCAGAGGCAGCATCAGCGTCATAAACATAAATATGCGTCCAATTTGTCGTAG
Protein Sequence: MDNNTGVNWSSSTVTMEGLHKSAIIYRKNSACFIYVCYHCGNMFDEVTETLQHIESHFQLANVVIGQLAEDEKGENLGDCFAVTRTNSVMEPFAEDSKDDNLGGDCFAITSVNSTVDIKVEAMDHSDGDGESLLKSEPQANQVRREFRCKICNSIESSKFSIRIHALIQHIREPMKCTHCNSTTFQRLDDFENHLRAHIAEGEVNWKSVTDGIQSTVDVDWSAYYEAMLRQDNKIKEEIARTSESPHELTIAKRPRRKQTRRRVYSRPYRCHKCSQTCRYMNALRSHYNTHVDEDLLRAYRCKECDCYYKNAYSLRVHVLDTHRMVKRLSCKGCALEFNCSHEKQFEEHLQLHNGSDKKLWPDIRDGIDHVQEDFTQYEETTSFADEEHCCEFCTQRFYLKSNFDVHMTSVHSGQRRLQCGQCDAIFTTPKFYFAHQLEHQRVGATIVERDDNVLLANLDACIDERIIYDEDELNQRLYRCLICNTAFDIHYDIRSHIRERHVYKMFPPPVEPKKEFICDLCGMRLKTKAAVKNHLLIHTNTKKHPCTICGKMFRQNSDRRIHERQHTGEKPFQCHLCGKAFISNGLLTAHKKSHDDTTYPCPICGRVFNLPSGYRKHIQTHRQDRSFKCTVCPKSFNTKIYLSKHMSIHSDKQYQCRFCDSKFSTSDGQRQHQRHKHKYASNLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245704;
90% Identity: iTF_00245704;
80% Identity: -