Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:6143566-6145924[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0033 0.14 12.5 0.9 1 23 35 57 35 57 0.97

2 14 1.1 46 4.6 0.2 1 21 144 169 144 170 0.76

3 14 1 45 4.6 2.4 3 23 174 195 172 195 0.87

4 14 0.052 2.3 8.7 7.7 1 23 270 292 270 292 0.99

5 14 0.00096 0.042 14.2 2.4 1 23 301 324 301 324 0.94

6 14 0.16 6.9 7.2 5.6 1 23 390 413 390 413 0.95

7 14 0.0039 0.17 12.3 0.2 2 23 420 441 419 441 0.96

8 14 0.012 0.52 10.7 1.1 1 23 480 503 480 503 0.97

9 14 0.0022 0.097 13.0 0.1 1 23 518 540 518 540 0.97

10 14 2.3e-05 0.00098 19.3 1.9 1 23 546 568 546 568 0.96

11 14 1.4e-06 5.9e-05 23.2 1.2 1 23 574 596 574 596 0.98

12 14 5.2e-07 2.2e-05 24.5 0.1 1 23 601 623 601 623 0.98

13 14 9.2e-07 4e-05 23.7 1.5 1 23 629 651 629 651 0.98

14 14 0.031 1.3 9.4 5.2 1 23 656 679 656 679 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0033	0.14	12.5	0.9	1	23	35	57	35	57	0.97
2	14	1.1	46	4.6	0.2	1	21	144	169	144	170	0.76
3	14	1	45	4.6	2.4	3	23	174	195	172	195	0.87
4	14	0.052	2.3	8.7	7.7	1	23	270	292	270	292	0.99
5	14	0.00096	0.042	14.2	2.4	1	23	301	324	301	324	0.94
6	14	0.16	6.9	7.2	5.6	1	23	390	413	390	413	0.95
7	14	0.0039	0.17	12.3	0.2	2	23	420	441	419	441	0.96
8	14	0.012	0.52	10.7	1.1	1	23	480	503	480	503	0.97
9	14	0.0022	0.097	13.0	0.1	1	23	518	540	518	540	0.97
10	14	2.3e-05	0.00098	19.3	1.9	1	23	546	568	546	568	0.96
11	14	1.4e-06	5.9e-05	23.2	1.2	1	23	574	596	574	596	0.98
12	14	5.2e-07	2.2e-05	24.5	0.1	1	23	601	623	601	623	0.98
13	14	9.2e-07	4e-05	23.7	1.5	1	23	629	651	629	651	0.98
14	14	0.031	1.3	9.4	5.2	1	23	656	679	656	679	0.97

Sequence Information

Coding Sequence: atggaCAATAACACGGGCGTAAATTGGTCCAGCAGCACCCTAACCATGGAAGGACTACACAAATCTGCGATAATTTACCGCAAGAATTCGGCCTGTTTCATCTATGTGTGCTTTCACTGCGGTCGTATGTTTAACGAAATCAGCGAAACTCTGCAGCACATCGAATCACACTTTCAACTGGCCAATGTTGTGATCGAGCAGTTCGCTGAGGATGAGAAGGGCGACAATTTGGGTGATCGTTTTTCGATAACAGCAACAGACTCTGTGATAGAACAATTAGCTGAGGATGTCAAGGGTGACAATTTGGGCGATTGTTTTGCGATAACATCAGTGAACTCTACCGTTGATATTAAGGTGGAAGTTATGGACCATTGTGATGGAGAGTCCTTGCTTCAATCGGAACCACAGGTTAATCAGGTCAAGCGAgaatttcgttgtaaaatttgcaattcaattgaatcgtcaaaattttcggttcgcGTCCATGCTTTGATTCAACACATCCGGGAACCGATGAAATGCATTCACTGCAACAGCACAACCTTTCAACGAATCGACGATTTCGAGAATCATTTAAGAACTCACATTGCTGCGGGTGAAgtcaattggaaaaatttgaccgaCGGCATTCAGTCAACAGTGGACGTTGACTGGTCTGCTTACTATGAAGCTATGCAAACGGTAAACGTGCGGCAAGACAACAATATCACGGAAGAAATCCCGAAAACAAGTCAATCACCTCACGAACTTACAACAGCCAAAAGACCTCGACGAAAACAGACTAGAGCGCGAGTGTATTCCCGACCGTATCGCTGCCATAAATGCTCTCAAACATGTAGATACATGAACGCTTTAAGAAGTCACTACAGCACGCATGTAGACGAAGATCTGTTACGGGCATACAGATGCAAAGAATGTGACTGCTACTACAAGAACGCGTACTCGCTTCGAATTCATGTTCTCGAAACGCATCGAATGGTAAAGAGACTAAGCTGTAAGGGATGCGCGttggaatttaattgttcTCACGAGAAACAGTTCGAAGAGCATTTACAGCTACACAATGGAAGAGACAAGAAACTATGGCCGGACATACGGGACGGAATCGATCATGTGCAGGAAGACTTCACACAATATGAGGAAACCACTTCGTTTACCGACGAAGAGCACTGCTGCGAATTCTGTACGCAAAGATTTTActtaaaatcgaattttgaTGTGCACATGACGAGTGTCCATTCTGGTCAACGTCGACTCCAGTGTGGCCAGTGCGATGCGATATTTACAACGCCTAAGTTCTATTTTGCTCATCAATTGGAACATCAACGAGTCGGCGCTACCATTGTCGAACGAGACGACAATGTTCTTCTGGCCAATCTGGACGCTTGCATCGATGAACGAATTGTTTACGACGAAGATGAGTTCAATCAACGATTGTACCGTTGTTTGATCTGTAACACCGCATTCGACATACATTACGACATTCGATCACATATCCGGGAACGGCACGTCTACAAAATGTTTCCCCCGCCGGTGGAACCGAAAAAGGAATTCATTTGCGATTTGTGTGGCATGAGATTGAAGACCAAAGCGGCTGTAAAGAATCACTTGCTGATCCATACGAATACCAAGAAACATCCGTGCACGATTTGTGGGAAAATGTTCCGTCAGAATTCGGATCGGCGAATTCACGAACGTCAGCACACTGGAGAGAAACCTTTTCAATGTCACCTTTGCGGCAAGGCATTCATTTCTAACGGACTGTTAACCGCACACAAAAAATCTCACGACGACACCACATATCCGTGTCCGATTTGTGGACGAGTTTTCAATCTTCCATCCGGCTACAGGAAACACATACAAACGCATCGTCAGGATCGGTCGTTCAAATGCACGGTATGTCCGAAATCGTTCAACACCAAGATCTACTTAAGCAAACACATGTCCATTCACTCTGACAAGCAATACCAGTGTCGGTTCTGTGACAGTAAATTTAGTACCAGTGATGGTCAGAGGCAGCATCAGCGGCATAAACATAAATATGCATCGAATTTGTCGTAG
Protein Sequence: MDNNTGVNWSSSTLTMEGLHKSAIIYRKNSACFIYVCFHCGRMFNEISETLQHIESHFQLANVVIEQFAEDEKGDNLGDRFSITATDSVIEQLAEDVKGDNLGDCFAITSVNSTVDIKVEVMDHCDGESLLQSEPQVNQVKREFRCKICNSIESSKFSVRVHALIQHIREPMKCIHCNSTTFQRIDDFENHLRTHIAAGEVNWKNLTDGIQSTVDVDWSAYYEAMQTVNVRQDNNITEEIPKTSQSPHELTTAKRPRRKQTRARVYSRPYRCHKCSQTCRYMNALRSHYSTHVDEDLLRAYRCKECDCYYKNAYSLRIHVLETHRMVKRLSCKGCALEFNCSHEKQFEEHLQLHNGRDKKLWPDIRDGIDHVQEDFTQYEETTSFTDEEHCCEFCTQRFYLKSNFDVHMTSVHSGQRRLQCGQCDAIFTTPKFYFAHQLEHQRVGATIVERDDNVLLANLDACIDERIVYDEDEFNQRLYRCLICNTAFDIHYDIRSHIRERHVYKMFPPPVEPKKEFICDLCGMRLKTKAAVKNHLLIHTNTKKHPCTICGKMFRQNSDRRIHERQHTGEKPFQCHLCGKAFISNGLLTAHKKSHDDTTYPCPICGRVFNLPSGYRKHIQTHRQDRSFKCTVCPKSFNTKIYLSKHMSIHSDKQYQCRFCDSKFSTSDGQRQHQRHKHKYASNLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246600;
90% Identity: iTF_00246600;
80% Identity: -