Bodo012583.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000958.1:1797856-1803232[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.018 0.89 10.0 0.0 1 23 153 175 153 175 0.97 2 17 0.0004 0.02 15.2 6.1 1 23 180 202 180 202 0.99 3 17 0.0011 0.057 13.7 8.5 1 23 207 229 207 229 0.97 4 17 6.6e-06 0.00034 20.8 3.7 1 23 234 256 234 256 0.98 5 17 0.0033 0.17 12.3 2.2 1 23 263 286 263 286 0.95 6 17 0.0063 0.32 11.4 0.6 1 20 294 315 294 317 0.93 7 17 0.003 0.15 12.4 3.4 2 23 329 351 328 351 0.94 8 17 0.19 9.7 6.7 0.2 1 10 358 367 358 378 0.93 9 17 0.73 37 4.9 0.1 1 21 389 409 389 412 0.88 10 17 9.5e-05 0.0048 17.1 2.8 3 23 423 444 421 444 0.96 11 17 0.0021 0.11 12.9 1.6 2 21 448 467 447 468 0.95 12 17 0.00022 0.011 16.0 1.5 1 23 495 518 495 518 0.94 13 17 0.00022 0.011 16.0 3.6 1 23 535 558 535 558 0.96 14 17 0.42 21 5.6 1.1 1 20 564 582 564 584 0.81 15 17 2.2e-06 0.00011 22.3 3.1 1 23 595 618 595 618 0.98 16 17 0.0033 0.17 12.3 0.3 1 19 627 645 627 651 0.88 17 17 0.15 7.4 7.1 2.6 2 19 656 673 655 674 0.87
Sequence Information
- Coding Sequence
- ATGGATGTGAAATGGAGACtgcaaaaagaaataaaacaagAGGAGCCAGTCGAATACTATCTCATATCGTCGATATCCGACGAACAACTGAATGTGGCCTTAGATACGTACTCACCGCAGGTTAATCAACTGGAGgaaaattttccAGTTCAAGTGAAACAGGAATGCGTTGAACATATCTTCCAACCAGCTGTTTATAGTGATAATGATGGCGCTGAGCCAGTCGATCCGTTGGAATATGTGAACATAAAGCCACACAATGGAGACAATGGGACAAGTGACTACGAACCTGATTCTGAATATGAGGGTGACAATGGCGAAAATGATACGGACGAGGACTATGAAATTGGTAGCAATAAGAAGAAATCGCCGAAAACTTTGCAAAGTAAAGAGAACCTGAAACTCACAGACATTTCGATAGTTGAATACGATGAAATCTCATCGAAGGGACCACCATACGCTTGCAATGTTTGCTCGCTTACATTTCCAATTGTGAAAAGTTTGATTGCACACCGAAGCATCCACAAGGGAAAGAAATTTCAATGCGATTTGTGTAAACATGTATTTAAGAGCAAATCGCACATTTACGAACACATGAAGAGTCACCAAGAACCACAACACTGCTGTCCAACTTGCCACAAGACATTTGCACTGAAAAAGAGCTTTATTCGTCATCAGATGACTCACGAAGAAAAACGGTTCGAGTGCGACATCTGCAAAAAACGATTTCGTCAAAAAGGCCACGTATACGAACATATGAAGACACATCGTGAACGAGTCAAACGTTTCCATTGTGAAATTTGCGTTATGTCGTACTACGAACAGCGAACGTTAAACCGTCACATGAAATTTGCCCACTCCAATCTGCAACGCAAGCGTTTCCGTTGTCCGAACACACTGTGCGACAAGTCTTATTCGAGTGCACCGTCGTTTCGGATGCATGCCTGTGTCGATGGTCGACGTCCCCAAGACATGCTCAACACGAGCTGTTCGCAGTGCAACAAGCGATTTTTCAACAAATTCGAAATGAACCGACACGTAACACGAACGCACGTCAAGAAGCCGGACAATTTCCGGTGCAATGATTGTGGACGGGGATTCTTGTACCGTTACTGGGACTCGTATATTCTGCATGTGGCGCAAAAATGTGCCAAGCTCATTATATATGAGTGTGACTATTGTGCGAGACTGTTGCCGAGTAAGGCGAAATTGATGGAACATTTCGCTGGAGTGCATGGCATCGACAATACCACTAAAAAACTTGACTGTCCGAAGTGTACGAAATTTTTCTTCACCAAAAATAGCTTGAACTACCACATGAAGAAGTCTCACATCGAACTGAAGTGCACCTACTGCAATCTGACGTTGAAGTCGAAGAGCGGTCTCAATATGCACCAAAAGCACTGCATACCGAAGAAAACGTTCGAAAAATATTCCCAAAACAACGGCACGGATGCCGACGACGTGAATGGCGGATCGTCACATGCGTGCGAAATTTGCAAATGTTCGTTCATCAGTAAGGCCAATCTGTTAGAGCATCAGAATGAGGTTCATGTCCAAAAGAACTTTGTGTACCAAAATGATAATGTGTCGAGACCGCAGCACTCGTGTTCGACGTGCAATTTAACATTCGCCACCTCGAAGACCCTGGCCAGGCATCGGAAACGAATGCACAAAAACCGAAAGCACTTCAAATGCCCCACATGCAACGTCACATTCGGCGAAAAGCTGTACCACCAACATCTCCAGCGTGGTAAATGCAAGAAGAAGGAGTTGCAACGATATCAGTGCACGGTGTGTTCGAGAATTTTCACCAGAAATACGAATTTGAAGAAACACTTCCGGAAAATCCATTTGAACCAGAGAAGCGGTGCGCAATTCATTTGTGATATTTGCGGGCGATCGTTTGCATCGAAACGGTTCATGCTGGACCATTTTGTGCGCGGCGATCATCGGAACAGTCTGCAGTGTGAATTTTGTGGGACGACTTTCAAACACCTGTCGGCTTGCTGGAAGCATTCGGTTTACTGTAAAATGAAGCCATAG
- Protein Sequence
- MDVKWRLQKEIKQEEPVEYYLISSISDEQLNVALDTYSPQVNQLEENFPVQVKQECVEHIFQPAVYSDNDGAEPVDPLEYVNIKPHNGDNGTSDYEPDSEYEGDNGENDTDEDYEIGSNKKKSPKTLQSKENLKLTDISIVEYDEISSKGPPYACNVCSLTFPIVKSLIAHRSIHKGKKFQCDLCKHVFKSKSHIYEHMKSHQEPQHCCPTCHKTFALKKSFIRHQMTHEEKRFECDICKKRFRQKGHVYEHMKTHRERVKRFHCEICVMSYYEQRTLNRHMKFAHSNLQRKRFRCPNTLCDKSYSSAPSFRMHACVDGRRPQDMLNTSCSQCNKRFFNKFEMNRHVTRTHVKKPDNFRCNDCGRGFLYRYWDSYILHVAQKCAKLIIYECDYCARLLPSKAKLMEHFAGVHGIDNTTKKLDCPKCTKFFFTKNSLNYHMKKSHIELKCTYCNLTLKSKSGLNMHQKHCIPKKTFEKYSQNNGTDADDVNGGSSHACEICKCSFISKANLLEHQNEVHVQKNFVYQNDNVSRPQHSCSTCNLTFATSKTLARHRKRMHKNRKHFKCPTCNVTFGEKLYHQHLQRGKCKKKELQRYQCTVCSRIFTRNTNLKKHFRKIHLNQRSGAQFICDICGRSFASKRFMLDHFVRGDHRNSLQCEFCGTTFKHLSACWKHSVYCKMKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245701;
- 90% Identity
- -
- 80% Identity
- -