Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:5434591-5441493[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.02 0.87 10.0 0.0 1 23 153 175 153 175 0.97

2 16 0.0006 0.026 14.8 5.4 1 23 180 203 180 203 0.98

3 16 7.6e-06 0.00033 20.8 3.7 1 23 212 234 212 234 0.98

4 16 0.0038 0.16 12.3 2.2 1 23 241 264 241 264 0.95

5 16 0.0071 0.31 11.5 0.6 1 20 272 293 272 295 0.93

6 16 0.00017 0.0072 16.6 3.7 2 23 307 329 306 329 0.96

7 16 0.22 9.5 6.8 0.2 1 10 336 345 336 356 0.93

8 16 0.83 36 5.0 0.1 1 21 367 387 367 390 0.88

9 16 8.8e-05 0.0038 17.5 2.5 3 23 401 422 399 422 0.96

10 16 0.13 5.6 7.5 2.0 2 21 426 445 425 446 0.93

11 16 0.00067 0.029 14.7 1.6 1 23 473 496 473 496 0.92

12 16 0.0015 0.064 13.6 2.2 1 23 513 536 513 536 0.96

13 16 0.31 13 6.3 1.0 1 21 542 561 542 562 0.85

14 16 6.6e-06 0.00028 21.0 2.3 1 23 573 596 573 596 0.98

15 16 0.00017 0.0073 16.6 0.4 1 20 605 624 605 629 0.90

16 16 5.2 2.2e+02 2.5 2.4 2 19 634 651 633 652 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.02	0.87	10.0	0.0	1	23	153	175	153	175	0.97
2	16	0.0006	0.026	14.8	5.4	1	23	180	203	180	203	0.98
3	16	7.6e-06	0.00033	20.8	3.7	1	23	212	234	212	234	0.98
4	16	0.0038	0.16	12.3	2.2	1	23	241	264	241	264	0.95
5	16	0.0071	0.31	11.5	0.6	1	20	272	293	272	295	0.93
6	16	0.00017	0.0072	16.6	3.7	2	23	307	329	306	329	0.96
7	16	0.22	9.5	6.8	0.2	1	10	336	345	336	356	0.93
8	16	0.83	36	5.0	0.1	1	21	367	387	367	390	0.88
9	16	8.8e-05	0.0038	17.5	2.5	3	23	401	422	399	422	0.96
10	16	0.13	5.6	7.5	2.0	2	21	426	445	425	446	0.93
11	16	0.00067	0.029	14.7	1.6	1	23	473	496	473	496	0.92
12	16	0.0015	0.064	13.6	2.2	1	23	513	536	513	536	0.96
13	16	0.31	13	6.3	1.0	1	21	542	561	542	562	0.85
14	16	6.6e-06	0.00028	21.0	2.3	1	23	573	596	573	596	0.98
15	16	0.00017	0.0073	16.6	0.4	1	20	605	624	605	629	0.90
16	16	5.2	2.2e+02	2.5	2.4	2	19	634	651	633	652	0.87

Sequence Information

Coding Sequence: ATGGATGTGAAATGGAGACTACCCAAAGAAATAAAACAAGAGGAGCCAGTCGAATACTACCTCATATCGTCGATATCGGACGAACAACTGAATGTGGCCTTAGATACGTACACACCGCAGGTTGATCAACTGAAGgaaaattttccAGTTCAAGTGAAACAGGAATGCGTTGAACATATCTTCGAACCAGCTATTTATGGTGATAATGATGGAGCTGACTCAGTCGATCCATTGGAATATGTGAacatagagtcacacaatggAGGCAATGAGACAAGTGACTACGAACCCGATTCGGAATATGATGATAAAGATGGCGAAAATGATACAGACGAGGACTATGAAATTGGCAGCAAAAAGAAGAGACcgtcgaaaactttgcaaaaAAATGAGAATCTGAAACGCACAGACATTTCGATAGTTGAATACAAGGAAATCTCATCGAAAGGACCACCATACGCTTGCAATGTTTGCTCGCTAACGTTTCCAATTGTGAAAAGTTTGATAGCACACCGAAGCATCCACAAGGGAAAGAAATTTCAATGCGATTTATGCAAACACGTGTTTAAGAGCAAATCGCACATTTACGAACACATGAAGATTCGTCATCAGATGATTCACGAAGAAAAACAGTTCGAGTGCGACATCTGCAAAAAACGGTTTCGTCAAAAGGGCCACGTATACGAACATATGAAGACACATCGTGAACGAGTCAAACATTTCCATTGCGAAATTTGTGTCATGTCCTACTACGAACAGCGAACGTTAAACCGTCACATGAAATTTGCCCACTCCAATTTGCAACGCAAGCGTTTCCGTTGTCCGAACACACTGTGTGATAAGTCGTATTCCAGTGCACCGTCGTTCCGGATGCACGCCTGTGTGGATGGTCGACGTCCTCAAGATATGCTCAACACGAGCTGTTCGCAGTGCAATAAGcgatttttcaacaaattcgaACTGAACCGACACGTAAAACGAACGCACGTCACGAAACCGGACAATTTCCGGTGCAATGATTGTGGACGAGGATTCTTGTACCGTTACTGGGATTCGTATATTCTACATGTGGCGCAAAAATGTGCCAAGCTCATCATATACGAGTGTGACTATTGTGCGAGACTGTTGCCGAGCAAAGCGAAATTGATGGAGCATTTCGCTGGAGTGCATGGCATCGACAATACCACAAAAAAACTTGACTGTCCGAAgtgtacaaaatttttcttcaccAAAAACAGCTTGAACTACCACATGAAGAAGCTTCACATCGACCTGAAGTGTACCTACTGCAATCTGACATTGAAGTCCAAGAGCGGTCGCAATTTGCATCAGAAGCACTGCATACCGAAGAAAACgttcgaaaaatattcccaaaacAACGGCACGGTTGCCGGCGATCCGAATGGGGGATCGTCACATGCATGTGAAATTTGCAAATGTTCGTTCATCAGTAAAGCTAATCTGCTGGAGCATCAGACGGAGGTTCATGTCGAAAAGAACTTCGCGATCCAAGACGATAATATGTCGATACCTCAGCACTCGTGTTCGACGTGCAATTTAACATTCGCCACCGCGTTGACTCTGGCCAAGCACCGGAAACGAATGCACAAGAATCGAAAGCACTTCAAATGTCCCACATGCAACGTTACATTCGGCGAAAAATTGTACCAGCAACACTTCCGACGTAGCAAATGCAAGAAGAAGGAGTTGCCACGATATCAGTGCACGGTGTGTGCGAGAATTTTCACCAGAAATACGAATTTGAAGAAACACTTCCGGAAAATCCATTTGAACGAGAGAAGCGGTACGCATTTCATTTGTGATATTTGCGGGCGATCGTTTTCATCGAAACGGTCCATGCTGAACCATTTTGTGCGCGGCGATCATCGGAACAGTCTACagtgtgaattttgtgcgACGACGTTCAAACACCTATCGGCTTGCTGGAAGCATTCGGTTTACTGTAAATCGAAGCCATAG
Protein Sequence: MDVKWRLPKEIKQEEPVEYYLISSISDEQLNVALDTYTPQVDQLKENFPVQVKQECVEHIFEPAIYGDNDGADSVDPLEYVNIESHNGGNETSDYEPDSEYDDKDGENDTDEDYEIGSKKKRPSKTLQKNENLKRTDISIVEYKEISSKGPPYACNVCSLTFPIVKSLIAHRSIHKGKKFQCDLCKHVFKSKSHIYEHMKIRHQMIHEEKQFECDICKKRFRQKGHVYEHMKTHRERVKHFHCEICVMSYYEQRTLNRHMKFAHSNLQRKRFRCPNTLCDKSYSSAPSFRMHACVDGRRPQDMLNTSCSQCNKRFFNKFELNRHVKRTHVTKPDNFRCNDCGRGFLYRYWDSYILHVAQKCAKLIIYECDYCARLLPSKAKLMEHFAGVHGIDNTTKKLDCPKCTKFFFTKNSLNYHMKKLHIDLKCTYCNLTLKSKSGRNLHQKHCIPKKTFEKYSQNNGTVAGDPNGGSSHACEICKCSFISKANLLEHQTEVHVEKNFAIQDDNMSIPQHSCSTCNLTFATALTLAKHRKRMHKNRKHFKCPTCNVTFGEKLYQQHFRRSKCKKKELPRYQCTVCARIFTRNTNLKKHFRKIHLNERSGTHFICDICGRSFSSKRSMLNHFVRGDHRNSLQCEFCATTFKHLSACWKHSVYCKSKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246572;
90% Identity: -
80% Identity: -