Bodo005306.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001674.1:2019817-2023134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0018 0.091 13.1 1.4 1 23 23 45 23 45 0.95 2 15 0.015 0.74 10.2 2.2 1 23 52 74 52 74 0.97 3 15 0.74 38 4.9 1.5 2 23 85 106 84 106 0.89 4 15 7.2e-08 3.6e-06 26.9 3.6 1 23 109 131 109 131 0.98 5 15 7.6e-05 0.0039 17.4 2.6 1 23 137 159 137 159 0.97 6 15 2.4e-05 0.0012 19.0 0.3 2 23 166 188 165 188 0.95 7 15 7.8e-06 0.00039 20.5 3.1 1 23 194 216 194 216 0.99 8 15 0.00015 0.0074 16.5 0.1 1 23 222 246 222 246 0.98 9 15 6.7e-05 0.0034 17.6 4.6 1 23 252 275 252 275 0.95 10 15 0.00017 0.0087 16.3 3.1 1 23 501 524 501 524 0.96 11 15 5.9e-05 0.003 17.8 0.5 2 23 536 558 535 558 0.94 12 15 5e-07 2.5e-05 24.3 0.8 1 23 564 586 564 586 0.98 13 15 0.00052 0.026 14.8 2.4 1 23 592 614 592 614 0.98 14 15 0.0011 0.055 13.8 3.5 1 23 620 642 620 642 0.99 15 15 1e-05 0.00052 20.2 1.6 1 23 648 671 648 671 0.97
Sequence Information
- Coding Sequence
- ATGGACCCATCAGAAGAATGTGACAAACAATCAGATCAAGATGAAGAAACGCAATCAAATAACCATCATGAATGTTTAGTATGTTTTCGAGTCTTTGCAAATTCATACCGATTGAGACGGCACAGCATTGTTCATTCGACGGATAATAAAATCTTCAATTGTCAATTTTGTGACTTGACTTTTCGTCTGCACAATGAGCTGATAATGCACGAATCTACACACCAACGAACGCTCGCCAATATTAATCTAAAACGATGTAAAATTTGCGGCTTAGCTTGTTACGATGACAATCTCCTTGCCCATTTCAAGGAGTTCCACGAACATTTCGAATGTGATTTATGCAAAAAAGTCTTTCGCACAAAGAGTCACTTAAAACTTCACATGCGAATCCACATCAATGCCAGAGATTTTAAGTGTTCCATTTGCCCAAAAAAGTTTAACTTTTTCACCCAACTGAAACGGCACGAAGGGACACATTCCCCCACTTTCGTATGGTATTGCGAGATCTGTGGCGTTGGATTTAGAAGCAAACCCAGTCTTTCTCATCATATGCGAGCGCTTCATAACGGTGAAAAACCTTTTCAGTGCGATCGCTGTGACCGATGTTTTTCGACCAAGCAAAGCCTGGATTTACATATTCGAATCCACGATGGCACCAAACCTTACAAGTGTCCCTGGGTCGAGTGTGGTCGAGGTTTCTATGATTTGGCTACAATGAAAGTGCATACAAGACAGCACACCAATGAGCATCCGTATAAGTGTCATCTCTGCGGAAAGACTACGAAACAAGCGAGTAATATGAAGTCACACTATCTCCACGCTCATAAGATCAAAGACATAACCAGTAAAACGATTCGCGCGAATGCTCGTTTGTTCGAGAAATACAAAACGGAAAATCTGCCTGAATCCGGTCTGCTGGAAATTTTAAGTCAGCAGGTGATGCAAAACCTTGCCAACCAACATGCTGCCAACAATACCGCGATAAAGCAAGAACCTACAACTGAGAAATTGAATTCAGGGCAACAAGAGTACATCGGGAATGTAACGCAGGAACCAACCACCTCATCAGTTGAAAGAAATGAACAAAAGAACGTATTGTCTGACAACGCAATCAAACTGGAAAGTTCTTGTGATTTTGAATTCATCTCCTCTGATAGTCGAAGCAATAAATCTCATGTCAAGGAAGAAGCTTGTGATACGATTGCTTCTTCTGCGGACACAGCAAAAGTTCAAAAAGAAAGCCGAGTGACTCTGAAAAATCGTCACAAAGTGAAAAAACCAGCCGTTGAAACAGTTATCATGAATGGTGACCTCCAATCAAACCAAATCGAGGATGTGGTGGTGAAAAGTGAAGATCGATTTTACGTGTTTCAAATCAGTGAGCTTGAAGATGGCACCGCTTGTAGTGATCCAATAAAATCGGAATGTACAGACAACTCTTCACCGATAACCGGTCAAACTACAAATGACTCACCACAAGTGCAGAAATCTAACAAAACATTCCACTGTGATATTTGCCCTAAGTCCTATTCGCAAAAATCGAAACtgaaatttcacataaaatcgATCCACACAGTGGAAGGAATTGGAATTGACAAACGGAAAATGTGTGAGATTTGCGGGAAGACGTACGGTGAAAATTCGGCTCTGCAGAAACACCTAAAATTTACTCATTCAAATATTCGACCATTTTCGTGCGAAATTTGTGGTCGATCGTTTAAGGATTCAAATGGTCTGAAGgTTCACAAACGATCGCACAGTGGAGAGAAACCTTACAGTTGCTCCTTCTGTTCAAAAACCTTTTCAACATCAATCGGTCGAAATCTTCACCAGCGTAGCCATACGGGAGAAAAgcCATACAAATGTACATTCTGCGACAGTGCCTTTTCTGATAGCTCAACGTGCAAACAGCACATTCGGGTGCATACAGGAGAGAAACCGTACATTTGTCATCTTTGCGGTAAGGGTACCACACAGGCTGGCAACTTAAAGTCACACCTTCGTCATGCTCATAAAATTCATGTGAAACATGTTACGATGAAACAAGGAAATTAG
- Protein Sequence
- MDPSEECDKQSDQDEETQSNNHHECLVCFRVFANSYRLRRHSIVHSTDNKIFNCQFCDLTFRLHNELIMHESTHQRTLANINLKRCKICGLACYDDNLLAHFKEFHEHFECDLCKKVFRTKSHLKLHMRIHINARDFKCSICPKKFNFFTQLKRHEGTHSPTFVWYCEICGVGFRSKPSLSHHMRALHNGEKPFQCDRCDRCFSTKQSLDLHIRIHDGTKPYKCPWVECGRGFYDLATMKVHTRQHTNEHPYKCHLCGKTTKQASNMKSHYLHAHKIKDITSKTIRANARLFEKYKTENLPESGLLEILSQQVMQNLANQHAANNTAIKQEPTTEKLNSGQQEYIGNVTQEPTTSSVERNEQKNVLSDNAIKLESSCDFEFISSDSRSNKSHVKEEACDTIASSADTAKVQKESRVTLKNRHKVKKPAVETVIMNGDLQSNQIEDVVVKSEDRFYVFQISELEDGTACSDPIKSECTDNSSPITGQTTNDSPQVQKSNKTFHCDICPKSYSQKSKLKFHIKSIHTVEGIGIDKRKMCEICGKTYGENSALQKHLKFTHSNIRPFSCEICGRSFKDSNGLKVHKRSHSGEKPYSCSFCSKTFSTSIGRNLHQRSHTGEKPYKCTFCDSAFSDSSTCKQHIRVHTGEKPYICHLCGKGTTQAGNLKSHLRHAHKIHVKHVTMKQGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245651;
- 90% Identity
- iTF_00245651;
- 80% Identity
- -