Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NC:8757123-8760582[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0021 0.092 13.1 1.4 1 23 23 45 23 45 0.95

2 15 0.017 0.75 10.2 2.2 1 23 52 74 52 74 0.97

3 15 0.18 7.7 7.1 1.2 2 23 85 106 84 106 0.93

4 15 8.5e-08 3.7e-06 27.0 3.6 1 23 109 131 109 131 0.98

5 15 3.6e-05 0.0015 18.7 2.3 1 23 137 159 137 159 0.97

6 15 2.7e-05 0.0012 19.1 0.3 2 23 166 188 165 188 0.95

7 15 9.9e-05 0.0043 17.3 2.1 1 23 194 216 194 216 0.99

8 15 0.00057 0.024 14.9 0.8 1 23 222 246 222 246 0.98

9 15 7.9e-05 0.0034 17.6 4.6 1 23 252 275 252 275 0.95

10 15 0.00029 0.012 15.8 3.5 1 23 499 522 499 522 0.96

11 15 7e-05 0.003 17.8 0.5 2 23 534 556 533 556 0.94

12 15 5.9e-07 2.5e-05 24.3 0.8 1 23 562 584 562 584 0.98

13 15 0.0005 0.022 15.1 2.2 1 23 590 612 590 612 0.98

14 15 0.0013 0.056 13.8 3.5 1 23 618 640 618 640 0.99

15 15 6.6e-06 0.00029 21.0 1.6 1 23 646 669 646 669 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0021	0.092	13.1	1.4	1	23	23	45	23	45	0.95
2	15	0.017	0.75	10.2	2.2	1	23	52	74	52	74	0.97
3	15	0.18	7.7	7.1	1.2	2	23	85	106	84	106	0.93
4	15	8.5e-08	3.7e-06	27.0	3.6	1	23	109	131	109	131	0.98
5	15	3.6e-05	0.0015	18.7	2.3	1	23	137	159	137	159	0.97
6	15	2.7e-05	0.0012	19.1	0.3	2	23	166	188	165	188	0.95
7	15	9.9e-05	0.0043	17.3	2.1	1	23	194	216	194	216	0.99
8	15	0.00057	0.024	14.9	0.8	1	23	222	246	222	246	0.98
9	15	7.9e-05	0.0034	17.6	4.6	1	23	252	275	252	275	0.95
10	15	0.00029	0.012	15.8	3.5	1	23	499	522	499	522	0.96
11	15	7e-05	0.003	17.8	0.5	2	23	534	556	533	556	0.94
12	15	5.9e-07	2.5e-05	24.3	0.8	1	23	562	584	562	584	0.98
13	15	0.0005	0.022	15.1	2.2	1	23	590	612	590	612	0.98
14	15	0.0013	0.056	13.8	3.5	1	23	618	640	618	640	0.99
15	15	6.6e-06	0.00029	21.0	1.6	1	23	646	669	646	669	0.97

Sequence Information

Coding Sequence: ATGGACCCATCAGAAGAATGTGACAAACAATCAGATCACGATGAAGAAACACAATCAAATCTACATCACGAATGTTTAGTGTGTTTTCGAGTCTTTGCAAATTCGTACCGATTGAGACGGCACAGCATTGTTCATTCGACGGAGAATAAAATCTTCAATTGTCAGTTCTGTGACCTGACGTTTCGTCTGCACAATGAGCTGATAATGCACGAATCGACACACCAACGGACACTCGCCAATATTAATCTGAAACGATGTAAAATCTGCGGCATAGCCTGTTATGAAGACAACCTACTTGCTCATTTCAAGGAGTTCCACGAGCATTTCGAATGTGATTTATGCAAAAAAGTCTTTCGCACAAAGAGTCACTTAAAACTTCACATGCGAATCCACATCAATGCCAGAGATTTTAAGTGTTCCATTTGCCCAAAAACGTTTAACTTTTTCACCCAACTAAAACGACATGAAGGGACACATTCCCCCTCTAACGTATGGTATTGCGAGATCTGTGGCGTTGGATTTAAAAGCAAACCAAGTCTTTCTCATCATATGCGAGCTCTACATAACGGTGAAAAGCCTTTTCAGTGCGATCGCTGTGACCGATGCTTTTCGGCCAAGCAAAGCCTGGACCTACATATTCGGATCCACGATGGCACCAAACCTTACAAGTGTCCCTGGGTCGAGTGTGGACGCGGTTTCCATGATTTGACTACAATGAAAGTGCATACAAGACAGCACACTAATGAGAATCCGTATAAATGTCATCTCTGTGGAAAGACTACGAAACAAGCGAGTAATATGAAGTCACACTATCTGCACGCTCACAAGATCAAAGACATTACCAGTAAAACAATTCGCGCGAATGCTCGTTTATTCGAGAAATACAAAACGGAGGATCTGCCTGAATCTGGTctgttggaaattttaagccAGCAGGTGATGCAAAACCTTGCCAACCAATATGCTGCCAACAATAATGCAATCAAGGAAGAACTTACAACCGAGAAATTAAATTCAGGACGACAAGAGTACGTCGGGAACTTAATGAAGGAACCAACCACCTCATCAGTTGAAAGAAATGAACAAACGAATGTAGTATCTGACAATGCAATCAAACTGGAAAGCTCTTGTGATATTGAATTCGTCTCCTCTGATGTTCGAAACAACACATTTCATGTTAAGGAAGAAGCTTGTGATGCCATTGCTTCTGCTGCGGACGcagcaaaaattcaaaaagaaagTCAGGTGACACCGAAAAATCGTCACAATCCGAAAAAACCAGCCGTTGAAACAGTTATCATCGGCGACCTCCAATCAACGGAAATCGAGGATGTGGTGGTGAAAAGTGAAGATCGATTTTATGTGTTCCAAATAAGCGAACTGGAAGATGGTGCCGCTTGTAGTGATCCAATAAAATCAGAATGTACAGACAACACAGCACCGACAAACGGTCAAACTCCAAATGACTCACCGGTGCAAAAGTCTAACAAAACATTCCACTGTGATATTTGCCCGAAGTCCTATTCGCAAAAAtcgaaactaaaatttcacataaaatcgATGCACACAGTGGAAGGGATTGGAATTGACAAACGGAAAATGTGTGAGATTTGCGGGAAGACGTACGGTGAAAATTCGGCTCTGCAGAAACACTTGAAATTCACTCATTCAAATATTCGACCGTTTTCGTGCGAAATCTGTGGTCGATCGTTTAAGGATTCAAATGGTCTGAAGgTTCACAAACGGTCGCACAGTGGAGAGAAACCTTACAGTTGTTCCTTCtgttcaaaatcattttcaacatCAATCGGTCGAAATCTTCACCAGCGCAGCCATACGGGAGAAAAgcCATACAAGTGTACATTCTGTGACAGTGCTTTTTCTGATAGCTCTACGTGTAAACAACACATTCGGGTGCATACCGGAGAGAAGCCGTACGTTTGTCATCTTTGCGGTAAGGGTACTACACAGGCTGGCAACTTAAAGTCACACCTTCGACATGCTCATAAGATCCATGTGAAACATGTTACGATGAAACAAggaaattag
Protein Sequence: MDPSEECDKQSDHDEETQSNLHHECLVCFRVFANSYRLRRHSIVHSTENKIFNCQFCDLTFRLHNELIMHESTHQRTLANINLKRCKICGIACYEDNLLAHFKEFHEHFECDLCKKVFRTKSHLKLHMRIHINARDFKCSICPKTFNFFTQLKRHEGTHSPSNVWYCEICGVGFKSKPSLSHHMRALHNGEKPFQCDRCDRCFSAKQSLDLHIRIHDGTKPYKCPWVECGRGFHDLTTMKVHTRQHTNENPYKCHLCGKTTKQASNMKSHYLHAHKIKDITSKTIRANARLFEKYKTEDLPESGLLEILSQQVMQNLANQYAANNNAIKEELTTEKLNSGRQEYVGNLMKEPTTSSVERNEQTNVVSDNAIKLESSCDIEFVSSDVRNNTFHVKEEACDAIASAADAAKIQKESQVTPKNRHNPKKPAVETVIIGDLQSTEIEDVVVKSEDRFYVFQISELEDGAACSDPIKSECTDNTAPTNGQTPNDSPVQKSNKTFHCDICPKSYSQKSKLKFHIKSMHTVEGIGIDKRKMCEICGKTYGENSALQKHLKFTHSNIRPFSCEICGRSFKDSNGLKVHKRSHSGEKPYSCSFCSKSFSTSIGRNLHQRSHTGEKPYKCTFCDSAFSDSSTCKQHIRVHTGEKPYVCHLCGKGTTQAGNLKSHLRHAHKIHVKHVTMKQGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246544;
90% Identity: iTF_00246544;
80% Identity: -