Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000568.1:585488-588592[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.5 25 5.4 0.7 2 23 62 83 62 83 0.96

2 16 0.00019 0.0096 16.2 1.4 1 23 89 111 89 111 0.98

3 16 1.6e-05 0.00082 19.5 2.9 1 23 116 138 116 138 0.98

4 16 4.7e-06 0.00024 21.2 0.4 1 23 144 166 144 166 0.99

5 16 5.5e-07 2.8e-05 24.2 0.4 3 23 174 194 172 194 0.96

6 16 5.9 3e+02 2.0 1.7 2 23 209 228 208 228 0.78

7 16 0.00067 0.034 14.5 0.6 1 20 238 257 238 260 0.93

8 16 1e-06 5.1e-05 23.3 2.6 1 23 266 288 266 288 0.98

9 16 3e-07 1.5e-05 25.0 0.8 1 23 294 316 294 316 0.98

10 16 0.00066 0.033 14.5 1.0 1 23 325 347 325 347 0.95

11 16 2.7e-06 0.00014 22.0 1.1 1 23 353 375 353 375 0.97

12 16 0.0039 0.2 12.0 7.7 1 23 381 403 381 403 0.98

13 16 4.4e-05 0.0022 18.2 4.9 1 23 416 438 416 438 0.96

14 16 3.1e-05 0.0015 18.7 1.0 1 23 444 467 444 467 0.95

15 16 0.0067 0.34 11.3 0.6 1 23 472 494 472 494 0.96

16 16 0.00075 0.038 14.3 0.2 2 19 502 519 501 522 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.5	25	5.4	0.7	2	23	62	83	62	83	0.96
2	16	0.00019	0.0096	16.2	1.4	1	23	89	111	89	111	0.98
3	16	1.6e-05	0.00082	19.5	2.9	1	23	116	138	116	138	0.98
4	16	4.7e-06	0.00024	21.2	0.4	1	23	144	166	144	166	0.99
5	16	5.5e-07	2.8e-05	24.2	0.4	3	23	174	194	172	194	0.96
6	16	5.9	3e+02	2.0	1.7	2	23	209	228	208	228	0.78
7	16	0.00067	0.034	14.5	0.6	1	20	238	257	238	260	0.93
8	16	1e-06	5.1e-05	23.3	2.6	1	23	266	288	266	288	0.98
9	16	3e-07	1.5e-05	25.0	0.8	1	23	294	316	294	316	0.98
10	16	0.00066	0.033	14.5	1.0	1	23	325	347	325	347	0.95
11	16	2.7e-06	0.00014	22.0	1.1	1	23	353	375	353	375	0.97
12	16	0.0039	0.2	12.0	7.7	1	23	381	403	381	403	0.98
13	16	4.4e-05	0.0022	18.2	4.9	1	23	416	438	416	438	0.96
14	16	3.1e-05	0.0015	18.7	1.0	1	23	444	467	444	467	0.95
15	16	0.0067	0.34	11.3	0.6	1	23	472	494	472	494	0.96
16	16	0.00075	0.038	14.3	0.2	2	19	502	519	501	522	0.93

Sequence Information

Coding Sequence: ATGAATGCGACACTGGAATCAGATGACCAGACTGAAACCAATCTGGTCGACGCAGTGATTCCAGACTCGTTGGACGATAAATCATCCAAAGTGGAATCGGATGACGATGACAGTTCGTCGTCTGAATATGACTTCTACAAAAATGTAACTGAAAAGCAGAAGAAGGCTGCCCTCAAACACAACGAATGTTTCGTATGCAAGAAACGCTTGGCTTCGTTTGCGATTTTCAAGCGACATGTCATGACACATGCCAAGCGAAAGAAATTCAAGTGCCACCTCTGCGAGAAATCCTTTTCGGAGGGCCGATACCTGGAAGATCATTTGCTGATCCATTCGGGAAACTTCCACACTTGCAACATTTGCCATAAGAATTTCGCTAATTCCAGAAGTCTTTTGGGTCACATTCGTATCCACACAGGTGAGAAACGGTACAAATGCGAAATTTGCGGCAAAGCATTCACAGAATCCTCAACGAGGGGCAAGCATATGGCTACGCATAGCACAGAACTTCCATTCGGTTGTGACCTGTGCGACAAAGCGTTCAGCCGAAAGTCCAACTTGCAGAGGCATGCCGAAATCCATGTGAGGGAGAAAAGGAAACTGACGACGGACGATGTGGGGCAGGAGTGTCCCATTTGCTTTAAGAATGTTACCGGCGATTTTAAGCGACACGTGAAATACCACGAGAAAGCGGAACAGAATACCAAAATCTATTCGTGTGATTTGTGCAGCGCCAGCTACACTCGATTCAACAATTTACAAGCCCACATGTGGAGGCACACGGGAAGGAAGGAGTATAGCTGTGATATTTGCTCCAAAGAGTTCAGCCACCTGTCCAACGTTAAGAAGCACATGAAGATCCATTCAGGGGATAGAAAATTCGTTTGCGATCAGTGTCCACGAGCATTTACCATGCGTTCGTTATTACGACGTCATTTGCGGACTCATTCCGGcgagaagaaagaaaagaatttcttatgCGACCTGTGTTCGAAATCATTCACCGAAAGCGGTTCGCTACGCTTTCACATGCTCACACACACGGGTATCAAATCACATGTCTGTGATGCATGCCCGAAAGCCTTTTATACCAAATCGGAGCTCCGAAAACACCAAAACGTTCATCAATCGCCAAAGCCTTTCAAATGCGACCACTGTCCTTCGTTGTTCTCGCATAAGCATACCCTAAAGAAGCATGCTCTAACGCATGAAGACAAAGCGGAGACGAAAGGCGAAGGTGAAGAGTACCTGTGCGACATCTGTTCGAAAAAGTTCACAACGAAACACAGTTTCCGAAATCACCTTAATAGCCACCGTGTTCCCAGCGAATTCACGTGCGAAATATGCCAGAAGACATTCTCGAAACTCTATCGCTTGAACAGTCACATCGAAAACATTCACAGTGAAAAACTGTACGACTGCACGATATGCTTGAAAGCGTTCGCTACCATTAAACGATTAAAACTGCACACCGACAAACATCTCGTCGAAAAGGAATCGTTACCGTGCACCTTGTGCCAGAAGGTGTTCCGATCGACAGCCAGTCTGGAGAAACATTTCGTCAAGTGCAAAAATGCAATAAGAATTCCACTGCATTTGGCCACAGCAACCACAACCGAATACAATAATGCATTGAATCTGTCGCAGACGATATACCATCGATATGGTACACTCGATGGATTTTCCGGACATACCACGACgtaa
Protein Sequence: MNATLESDDQTETNLVDAVIPDSLDDKSSKVESDDDDSSSSEYDFYKNVTEKQKKAALKHNECFVCKKRLASFAIFKRHVMTHAKRKKFKCHLCEKSFSEGRYLEDHLLIHSGNFHTCNICHKNFANSRSLLGHIRIHTGEKRYKCEICGKAFTESSTRGKHMATHSTELPFGCDLCDKAFSRKSNLQRHAEIHVREKRKLTTDDVGQECPICFKNVTGDFKRHVKYHEKAEQNTKIYSCDLCSASYTRFNNLQAHMWRHTGRKEYSCDICSKEFSHLSNVKKHMKIHSGDRKFVCDQCPRAFTMRSLLRRHLRTHSGEKKEKNFLCDLCSKSFTESGSLRFHMLTHTGIKSHVCDACPKAFYTKSELRKHQNVHQSPKPFKCDHCPSLFSHKHTLKKHALTHEDKAETKGEGEEYLCDICSKKFTTKHSFRNHLNSHRVPSEFTCEICQKTFSKLYRLNSHIENIHSEKLYDCTICLKAFATIKRLKLHTDKHLVEKESLPCTLCQKVFRSTASLEKHFVKCKNAIRIPLHLATATTTEYNNALNLSQTIYHRYGTLDGFSGHTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245644;
90% Identity: iTF_00245644;
80% Identity: -