Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:1203080-1206857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.9 83 3.8 0.8 2 23 75 96 75 96 0.94

2 16 9.9e-05 0.0043 17.3 1.1 1 23 102 124 102 124 0.98

3 16 2e-05 0.00085 19.5 2.9 1 23 129 151 129 151 0.98

4 16 1.2e-05 0.00052 20.2 0.5 1 23 157 179 157 179 0.99

5 16 6.6e-07 2.9e-05 24.1 0.4 3 23 187 207 185 207 0.96

6 16 6.9 3e+02 2.1 1.6 2 23 222 241 221 241 0.78

7 16 0.00081 0.035 14.4 0.6 1 20 251 270 251 273 0.93

8 16 1.2e-06 5.3e-05 23.3 2.6 1 23 279 301 279 301 0.98

9 16 3.6e-07 1.6e-05 25.0 0.8 1 23 307 329 307 329 0.98

10 16 0.0008 0.035 14.4 1.0 1 23 338 360 338 360 0.95

11 16 3.3e-06 0.00014 21.9 1.1 1 23 366 388 366 388 0.97

12 16 0.00056 0.024 14.9 8.5 1 23 394 416 394 416 0.99

13 16 0.00013 0.0054 17.0 5.7 1 23 429 451 429 451 0.96

14 16 8.6e-05 0.0037 17.5 1.2 1 23 457 480 457 480 0.95

15 16 0.0014 0.061 13.7 1.0 1 23 485 507 485 507 0.97

16 16 0.00091 0.039 14.3 0.2 2 19 515 532 514 535 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.9	83	3.8	0.8	2	23	75	96	75	96	0.94
2	16	9.9e-05	0.0043	17.3	1.1	1	23	102	124	102	124	0.98
3	16	2e-05	0.00085	19.5	2.9	1	23	129	151	129	151	0.98
4	16	1.2e-05	0.00052	20.2	0.5	1	23	157	179	157	179	0.99
5	16	6.6e-07	2.9e-05	24.1	0.4	3	23	187	207	185	207	0.96
6	16	6.9	3e+02	2.1	1.6	2	23	222	241	221	241	0.78
7	16	0.00081	0.035	14.4	0.6	1	20	251	270	251	273	0.93
8	16	1.2e-06	5.3e-05	23.3	2.6	1	23	279	301	279	301	0.98
9	16	3.6e-07	1.6e-05	25.0	0.8	1	23	307	329	307	329	0.98
10	16	0.0008	0.035	14.4	1.0	1	23	338	360	338	360	0.95
11	16	3.3e-06	0.00014	21.9	1.1	1	23	366	388	366	388	0.97
12	16	0.00056	0.024	14.9	8.5	1	23	394	416	394	416	0.99
13	16	0.00013	0.0054	17.0	5.7	1	23	429	451	429	451	0.96
14	16	8.6e-05	0.0037	17.5	1.2	1	23	457	480	457	480	0.95
15	16	0.0014	0.061	13.7	1.0	1	23	485	507	485	507	0.97
16	16	0.00091	0.039	14.3	0.2	2	19	515	532	514	535	0.93

Sequence Information

Coding Sequence: ATGAATGCCATATTGGAATCAGATGAACAGACCGAAAATGCTGCTCCCGGAATCGATCTGGCTGTAGGACTTGAAACCAATGTGGTTGACGCAGCAaTTCCAGATTCGTTGGACGATAAATCATCCAAAGTGGAATCGGATGACGAGGACAGTTCGTCGTCCGAATATGACTTCTACAAAAATGTAactgaaaagcaaaaaaaggcTGCCCTGAAACACAACGAATGTTTCGTGTGCAAGAAGCGCTTGGGATCGTTTGCAATTTTCAAGCGACATGTCATGACACACGCCAAGCGAAAGAAATTTAAGTGCCATCTCTGCCCGAAATCATTTTCAGAAGGCCGATACCTAGAAGACCATTTGCTGATCCATTCGGGAAACTTCCACACTTGCAATATTTGCCATAAGAATTTTGCCAATTCCAGAAGTCTGCTGGGTCACATTCGCATCCATACAGGTGAGAAGCGGTACAAATGCGAAATTTGCGACAAAGCGTTCACAGAATCCTCAACGAGGGGCAAGCATATGGCTACGCATAGCACAGAACTTCCATTCGGTTGTGACTTGTGCGACAAAGCGTTCAGCCGAAAGTCCAACTTGCAGAGGCATGCCGAAATCCATGTGAGGGAGAAAAGGAAACTGACGGCGGACGATGTGGGGCAGGAGTGCCCGATTTGCTTTAAGAATGTTACCGGCGATTTTAAGCGACACGTGAAATACCACGAGAAAGCCGAACAGAATACCAAAATTTATTCGTGTGATTTGTGCAGCGCCAGCTACACGCGATTCAACAATTTACAAGCCCATATGTGGAGGCACACGGGAAGGAAGGAGTATAGCTGTGATATTTGCTCCAAAGAGTTCAGCCACCTGTCAAACGTTAAGAAGCACATGAAGATCCATTCCGGGGATAGAAAATTCGTTTGCGATCAGTGTCCACGCGCATTTACCATGCGTTCGTTATTACGACGTCATTTACGGACTCATTCCGGcgagaagaaagaaaagaatttcctGTGCGACCTGTGTTCGAAATCATTCACCGAAAGCGGTTCGCTACGTTTTCACATGTTGACGCATACAGGTATCAAATCGCATGTCTGTGATGCGTGCCCGAAAGCCTTTTATACCAAATCGGAGCTCCGAAAGCACCAAAACGTTCATCAATCGCCGAAGCCTTTCAAATGCGACCATTGTCCTTCGTTGTTTTCGCATAAGCATACCCTGAAGAAGCATATGCTTACGCATGAAGACAAAGCGGAAACAAAAGGCGAAGGTGAAGAGTACCTGTGTGACATCTGTTCGAAAAAGTTCACAACGAAACACAGTTTCCGAAATCACCGAAATAGCCACCGCTTTCCCAGCGAATTTACGTGCGAAATATGCCAGAAGAAATTCTCCAAACTCTACCGCTTGAACAGTCACATCGAAAACATTCACAGCGAAAAACTGTACGACTGCACGATATGCTCGAAAGCGTTCGCTACCATGAAACGGTTAAAATTGCACACCGACAAACATCTCATCGAAAAGGAATCGTTACCGTGCACCTTGTGCCAGAAAGTGTTCCGATCGACAGCCAGTCTGGAGAAACATTTCGTCAAGTGCAAAAATGCAATGCGAATTCCACTGCATTTGGCCACAACAACCACAACCGAGTACAATAATGCATTAAATCTTTCGCAGTCAATATACCATCGATATAGTACGCTCGATGGATTTTCCGGGCATACCACGACGTAa
Protein Sequence: MNAILESDEQTENAAPGIDLAVGLETNVVDAAIPDSLDDKSSKVESDDEDSSSSEYDFYKNVTEKQKKAALKHNECFVCKKRLGSFAIFKRHVMTHAKRKKFKCHLCPKSFSEGRYLEDHLLIHSGNFHTCNICHKNFANSRSLLGHIRIHTGEKRYKCEICDKAFTESSTRGKHMATHSTELPFGCDLCDKAFSRKSNLQRHAEIHVREKRKLTADDVGQECPICFKNVTGDFKRHVKYHEKAEQNTKIYSCDLCSASYTRFNNLQAHMWRHTGRKEYSCDICSKEFSHLSNVKKHMKIHSGDRKFVCDQCPRAFTMRSLLRRHLRTHSGEKKEKNFLCDLCSKSFTESGSLRFHMLTHTGIKSHVCDACPKAFYTKSELRKHQNVHQSPKPFKCDHCPSLFSHKHTLKKHMLTHEDKAETKGEGEEYLCDICSKKFTTKHSFRNHRNSHRFPSEFTCEICQKKFSKLYRLNSHIENIHSEKLYDCTICSKAFATMKRLKLHTDKHLIEKESLPCTLCQKVFRSTASLEKHFVKCKNAMRIPLHLATTTTTEYNNALNLSQSIYHRYSTLDGFSGHTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246542;
90% Identity: iTF_00246542;
80% Identity: -