Bodo009272.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000474.1:5274272-5279757[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0077 0.39 11.1 0.3 1 23 139 161 139 161 0.97 2 14 7.7e-06 0.00039 20.6 2.8 1 23 168 191 168 191 0.96 3 14 1.6e-05 0.00083 19.5 6.6 2 23 204 226 203 226 0.95 4 14 0.053 2.7 8.5 0.4 2 19 245 262 244 264 0.91 5 14 5e-06 0.00025 21.2 4.1 1 23 378 400 378 400 0.98 6 14 1.6e-05 0.00083 19.5 6.1 1 23 406 428 406 428 0.97 7 14 4.3e-05 0.0022 18.2 1.6 1 20 434 453 434 454 0.94 8 14 2.4e-06 0.00012 22.1 0.7 3 23 470 490 469 490 0.98 9 14 5.3e-05 0.0027 17.9 0.7 1 23 495 517 495 517 0.97 10 14 2.9e-06 0.00015 21.9 0.4 1 23 523 545 523 545 0.96 11 14 1.7e-06 8.8e-05 22.6 1.0 1 23 551 573 551 573 0.98 12 14 7.4e-06 0.00038 20.6 0.8 3 23 581 601 579 601 0.96 13 14 6e-05 0.003 17.8 1.0 1 23 607 629 607 629 0.99 14 14 8e-05 0.004 17.4 1.3 1 23 634 657 634 657 0.97
Sequence Information
- Coding Sequence
- ATGGATGTCAGAGAGGTGTGTAGGACATGCCTGAAACGAGCCACAGAAATGCGGTCCATCTACGAAAATGATGATAGCGAACAGGACCTGTCAACAATGATAACATCCATTTCAGATACCACGGCCTCGGAACTGGATGGACTGCCGAGTCAAATTTGTATCGAGTGTCTCGGTACACTACGACAGTCGGTTCAGTTCAAACAACAGTGCGAAAATGCCTACGAAACATTGAAAAGTATGCTCGGCGTTTCTATCGAATCAACAAAGCCATTGGAAGAACCGGGTGTGGTGGAAAGCGATGCCGGCGACGCAATCGAATCGGATTCGAGTGACCACTTGTACACAGATACACGAGTCGATACGCAACATTGCGGTCCGAATGAAAAGTCCATCCAAACGGAAGACATTTGCTTCTATCCGTGCGAGATGTGCGAATTGAAATTCTTCAAGGAAGAAGCGTTGAAAGAGCATCGATTATTGCACAAGAACAAAGAGACGGGCTTCAAGTGTCGCAATTGCGATCGAAATTATACGAGGCTGTCACATTTGAGACGGCACATAAATGCCGCACATCCCGAGGTGAATATAAGCGGTAAACTGGACGACATTTACTGTAAGCAGTGTGACAAACACTTTACGCGACACGAACATTTACGCCGGCATATGCTGGTGCTGCATCCGGAGCAGACGGAAAAGGCAAAGTTGAAACTGGAAAGCGACTGTGAATCGGTTAAGTGTGGCGGATGCGGTCTAGTGTTTCCGAATCAACGCTGTTTCGATCAACACGAAAACTGCGAAGCCAAAATTGCTATGCCGGACGAGAAGCTTAGCATCGCGAAAATGGAATGCAATGAGGAGGAAATAGTTTTCGAGCCGGAAATCAGTGTCGAAGCGACAGATGTGCCTGTAAAGTCCGAAATCACATCAGATGATGAGCCGATGATCCCTGCCGAGGACGAGGACTCTTCGTATGCAATCGAAACGGCAGAGGAGGAAAATCAAATAGAAACAATTGAAGGCGACTGTGCATCGTTGCCTGCCGGAGTCGGCATTTCGAGAGGACGACGTGTGAAAAAAGCAGCAAAACAATCGCCGAAACCGAAACGACCGACCGGCCAGCAAGATAAAGTGCACCAATGCGCCAAGTGTGAGAAGATATTCAACCGAGCAACGCATTTAAAACGGCACATGGCAACACACAGTGATGTCAAGCCATACAGTTGTGAAATATGCGACAAGCGTTTCCGGCGACCCGATCACCTGAATATCCATCGGCACCATCATTCGTCAGTTAAACCGCACATTTGTGACATATGCCAGAAGGGATTCACTCGATCGGAACATCTGCGAAAACATAAGGAATGCCGTCACGGCGACAAGAGCCAGGTGACGTTAAAAACGgaattttgtgatatttgtcAGaaaggaTTTACGACACCGAAATATCTGCAAGTTCACATGAAATCGCACACCGATCGCACGTTTGCCTGTAAATTTTGTGAGGAAAAATTCGGAACCAAGGCCGAATTGAACGAACATCAAAAAACGCATGTCAACGAACGGCCGTTCCTCTGCTCCGAGTGTGGACTGAGATTCGTGCGGAACGATTACTTGGTCATTCATATGAGGCGACATAAAGGCGAAAAACCGTACAAATGCAAATACTGCAACAAAGGCTTCCCACGAGCAACGGACTTAACCGTTCACGAGAGATATCATACCGGCGAAAAAACGCACCTATGTACGATTTGCGGAAAGGGCTTCCAACGTGCCTACAATTTACTTGTCCATACCAGAGTGCATACAGgCGAACGACCGTACAAATGTCCTCACTGCATCAAAAGTTTCGCTCAGGGCAACGATCTAAAGGCTCATGTCCGCAGACACACTGGGGAACGTTACAAATGTGAAATTTGCAACGAGGGTTTCATTCAGGGCTACCACTTGACGCAGCACAAACGAAATGTCCATGGTATTGACATGAAGTCGCACATACGTCGCGTGGAGAAATTTATTCCGCCCGCTGAAAGTGTGGAAATTCAAGAAATGGATTTGTATCGAATGCAACAGAGCGAACACTTGCGCAAATTGCAGCAACAAGCCGATGATGGACCGGTGGATTTTCGTAATCACTTTAAGGTGGTCAACGATGACGGCACCATCGAGTTGTTGGAAGGAGTGGTGGAAAGCGGCGAATCGGAAATGATTAAAATTGAGCATACGCAAAATTTGTCAGCAAGATTCACGATCATCgGACATAACCGTCACCCAACCGAACATTCTACTGACGAGTGCCGACGAACAACTGGACGACCAAGCCGATGGAATTATGCCGCTAAATATCTTCTCTGA
- Protein Sequence
- MDVREVCRTCLKRATEMRSIYENDDSEQDLSTMITSISDTTASELDGLPSQICIECLGTLRQSVQFKQQCENAYETLKSMLGVSIESTKPLEEPGVVESDAGDAIESDSSDHLYTDTRVDTQHCGPNEKSIQTEDICFYPCEMCELKFFKEEALKEHRLLHKNKETGFKCRNCDRNYTRLSHLRRHINAAHPEVNISGKLDDIYCKQCDKHFTRHEHLRRHMLVLHPEQTEKAKLKLESDCESVKCGGCGLVFPNQRCFDQHENCEAKIAMPDEKLSIAKMECNEEEIVFEPEISVEATDVPVKSEITSDDEPMIPAEDEDSSYAIETAEEENQIETIEGDCASLPAGVGISRGRRVKKAAKQSPKPKRPTGQQDKVHQCAKCEKIFNRATHLKRHMATHSDVKPYSCEICDKRFRRPDHLNIHRHHHSSVKPHICDICQKGFTRSEHLRKHKECRHGDKSQVTLKTEFCDICQKGFTTPKYLQVHMKSHTDRTFACKFCEEKFGTKAELNEHQKTHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKYCNKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCIKSFAQGNDLKAHVRRHTGERYKCEICNEGFIQGYHLTQHKRNVHGIDMKSHIRRVEKFIPPAESVEIQEMDLYRMQQSEHLRKLQQQADDGPVDFRNHFKVVNDDGTIELLEGVVESGESEMIKIEHTQNLSARFTIIGHNRHPTEHSTDECRRTTGRPSRWNYAAKYLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245641;
- 90% Identity
- iTF_00245641;
- 80% Identity
- -