Bcop013647.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:679475-687230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0038 0.16 12.3 0.3 1 23 140 162 140 162 0.98 2 14 9.4e-06 0.0004 20.5 2.8 1 23 169 192 169 192 0.96 3 14 2e-05 0.00085 19.5 6.6 2 23 205 227 204 227 0.95 4 14 0.17 7.4 7.1 0.9 2 19 246 263 245 265 0.92 5 14 6e-06 0.00026 21.1 4.1 1 23 380 402 380 402 0.98 6 14 2e-05 0.00086 19.5 6.1 1 23 408 430 408 430 0.97 7 14 5.2e-05 0.0022 18.2 1.6 1 20 436 455 436 456 0.94 8 14 2.9e-06 0.00013 22.1 0.7 3 23 472 492 471 492 0.98 9 14 6.4e-05 0.0027 17.9 0.7 1 23 497 519 497 519 0.97 10 14 3.5e-06 0.00015 21.9 0.4 1 23 525 547 525 547 0.96 11 14 2.1e-06 9.1e-05 22.6 1.0 1 23 553 575 553 575 0.98 12 14 9e-06 0.00039 20.6 0.8 3 23 583 603 581 603 0.96 13 14 7.3e-05 0.0031 17.7 1.0 1 23 609 631 609 631 0.99 14 14 9.7e-05 0.0042 17.3 1.3 1 23 636 659 636 659 0.97
Sequence Information
- Coding Sequence
- ATGGACGTCAGAGAGGTGTGTAGGACATGCCTGAAACGAGCCACGGAAATGCGGTCCATCTACGAAAATGATGATAGCGAACAGGACCTGTCAACAATGATAACATCCATTTCAGATACCACGgCCTCGGAACTGGATGGACTGCCGAGCCAAATTTGTATCGAGTGTCTCGGCACTCTGCGACAGTCGGTTCAGTTCAAACAACAGTGCGAAAATGCCTACGAAACGTTGAAAAGTGTGCTCGGCGTTTCGATCGAATCAACAAAGCCATTGGAAGAACCGGGTGCGGTGGTGGAAAGTGATGTCGGCGATGCAATCGAATCGGATTCGAGTGACCACTTGTACACAGATCATCGGGTCGATACGCAACATTGCGGTCCGAACGAAAAGTCCATTCAAACGGAAGACATTTGCTTCTATCCGTGCGAGATGTGCgaactgaaatttttcaagGAAGAAGCGCTGAAAGAGCATCGATTGATGCACAAGAACAAGGAGACCGGTTTCAAGTGTCGCAATTGCGACCGGAATTACACGAGGCTGTCACATTTGCGACGGCACATCAATGCCGCACATCCCGAGGTGAATATCAGCGGAAAACTGGACGACATTTACTGTAAACAGTGTGACAAACACTTTACGCGACACGAACATTTACGCCGGCATATGCTGGTGCTGCATCCGGAGCAGACGGAAAAGGCAAAGTTGAAATTGGAAAGCGACGGCGAATCGGTTAAATGTGGCGGATGCGGTCTAGGGTTTCCGAATCAACATTGTTTCGATCAACACGAGAACTGCGAAGCCAAAATTGCGATACTGGACGAGAAGCTTAGCATCGCGAAAATGGAGTGCACTGAGGAGGAAATAGTTTTCGAGCCGGAAATCAGCGTCGAAGCCTGTACGACCGATGTGCCTGTAAAGTCGGAAATCACATCCGATGATGATGAGCCGATGATTCCTGCCGAGGACGAGGACTCTTCGTATGCAATCGAAACGGCAGAGGACGAAAATCAAATGGACACAATTGCAGGCGATTGTACATCGGACGGAGTCGCCATTTCGAAAGGACGACGTGCGAAAAAATCAGCAAAACAATCGCCGAAACCGAAACGACCGACCGGCCAGCAGGAGAAAGTTCACCAATGCGCCAAATGTGAGAAGATTTTCAACCGAGCGACGCATTTGAAACGGCACATGGCAACACACAGTGATGTCAAACCGTACAGTTGTGAAATATGCGACAAGCGTTTCCGGCGACCTGATCACCTGAACATCCATCGACACCATCATTCGTCCGTTAAGCCGCACATTTGTGACATATGCCAGAAGGGATTCACACGATCGGAACATCTGCGGAAGCATAAGGAATGCCGGCACGGCGACAAGAGCCAGGTGACGATAAAAACGGAATTCTGTGATATTTGTCAGAAAGGATTTACGACACCGAAGTATCTGCAAGTTCACATGAAATCGCACACCGATCGCACGTTTGCCTGCAAATTTTGTGAGGAAAAATTCGGAACCAAGGCCGAATTGAACGAACATCAAAAAACGCATGTCAACGAACGACCGTTCCTTTGCTCCGAGTGTGGACTGAGATTCGTGCGGAACGATTACTTGGTCATTCATATGAGGCGACACAAAGGCGAAAAGCCGTACAAATGCAAATACTGCAACAAAGGCTTCCCACGAGCAACGGACTTGACCGTTCACGAGCGCTATCATACCGGCGAAAAGACACATTTGTGTACGATATGCGGAAAGGGCTTCCAACGTGCCTATAATTTACTTGTCCATACCAGAGTGCATACAGgCGAACGACCGTACAAATGTCCCCACTGCATCAAAAGTTTCGCTCAGGGCAATGACCTCAAAGCTCACGTACGCCGACACACCGGGGAACGCTACAAATGTGAAATTTGCAACGAGGGTTTCATTCAGGGCTACCACTTGACGCAGCACAAACGAAATGTCCACGGCATTGACATGAAGTCGCACATTCGTCGCGTGGAGAAATTTATTCCGCCCGCTGAAAGTGTGGACATTCAAGAAATGGATTTGTACCGAATGCAACAGAGCGAACATTTGCGCAAATTGCAGCAACAAGCCGACGATGAACCGGTGGACTTTCGTAATCACTTTAAGGTGGTCAACGATGACGGCACCATCGAATTGTTGGGTGGAGTGGTGGAAAGTGGCGCCACGGAAATGATCAAAATTGAGCATACACAACATTTGTCGCAAGATTCACGATCGTCGGACATAACCGTCACCCAACCGAACATTCTACTGACGAATGCCGACGAACAACTCGACGACCAAGCCGATGGACTTATGCCGCTAAACATCTTCTCTGGCCTGCATTCCAAACTAAAATTGTCGACCAGTTTCCAACAGTAG
- Protein Sequence
- MDVREVCRTCLKRATEMRSIYENDDSEQDLSTMITSISDTTASELDGLPSQICIECLGTLRQSVQFKQQCENAYETLKSVLGVSIESTKPLEEPGAVVESDVGDAIESDSSDHLYTDHRVDTQHCGPNEKSIQTEDICFYPCEMCELKFFKEEALKEHRLMHKNKETGFKCRNCDRNYTRLSHLRRHINAAHPEVNISGKLDDIYCKQCDKHFTRHEHLRRHMLVLHPEQTEKAKLKLESDGESVKCGGCGLGFPNQHCFDQHENCEAKIAILDEKLSIAKMECTEEEIVFEPEISVEACTTDVPVKSEITSDDDEPMIPAEDEDSSYAIETAEDENQMDTIAGDCTSDGVAISKGRRAKKSAKQSPKPKRPTGQQEKVHQCAKCEKIFNRATHLKRHMATHSDVKPYSCEICDKRFRRPDHLNIHRHHHSSVKPHICDICQKGFTRSEHLRKHKECRHGDKSQVTIKTEFCDICQKGFTTPKYLQVHMKSHTDRTFACKFCEEKFGTKAELNEHQKTHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKYCNKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCIKSFAQGNDLKAHVRRHTGERYKCEICNEGFIQGYHLTQHKRNVHGIDMKSHIRRVEKFIPPAESVDIQEMDLYRMQQSEHLRKLQQQADDEPVDFRNHFKVVNDDGTIELLGGVVESGATEMIKIEHTQHLSQDSRSSDITVTQPNILLTNADEQLDDQADGLMPLNIFSGLHSKLKLSTSFQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246536;
- 90% Identity
- iTF_00246536;
- 80% Identity
- -