Bodo003871.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- ZNF711
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001217.1:702536-711485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.31 16 6.1 0.2 6 23 108 125 102 125 0.87 2 23 0.065 3.3 8.2 0.6 1 23 131 153 131 153 0.95 3 23 1.4e-06 6.9e-05 22.9 0.2 2 23 158 179 158 179 0.98 4 23 0.0013 0.066 13.6 0.2 1 23 185 209 185 209 0.97 5 23 6.5e-05 0.0033 17.6 2.7 2 23 236 257 235 257 0.96 6 23 6.1e-06 0.00031 20.9 0.9 1 23 263 285 263 285 0.98 7 23 1.6e-05 0.00082 19.5 3.2 1 23 291 314 291 314 0.97 8 23 0.0038 0.19 12.1 2.5 1 23 323 346 323 346 0.96 9 23 9.9e-08 5e-06 26.5 0.2 1 23 453 475 453 475 0.98 10 23 1.7e-06 8.8e-05 22.6 0.5 1 23 481 505 481 505 0.98 11 23 0.14 7.1 7.1 5.3 1 21 541 561 541 563 0.95 12 23 7.6e-06 0.00039 20.6 1.8 1 23 616 638 616 638 0.98 13 23 0.0098 0.5 10.8 2.0 1 23 644 666 644 666 0.97 14 23 0.0017 0.087 13.2 0.9 1 23 672 694 672 694 0.96 15 23 0.0028 0.14 12.5 3.1 2 23 701 722 700 722 0.96 16 23 2.7e-05 0.0013 18.9 1.1 2 23 944 965 943 965 0.98 17 23 0.00032 0.016 15.5 2.6 1 23 971 994 971 994 0.94 18 23 0.0025 0.13 12.6 1.0 1 23 1001 1023 1001 1023 0.95 19 23 6.5e-06 0.00033 20.8 4.1 1 23 1029 1051 1029 1051 0.98 20 23 0.00032 0.016 15.5 0.3 1 23 1133 1155 1133 1155 0.97 21 23 8.9e-08 4.5e-06 26.7 0.3 2 23 1160 1181 1159 1181 0.97 22 23 2.5e-06 0.00012 22.1 0.8 1 23 1187 1209 1187 1209 0.96 23 23 0.00058 0.029 14.7 3.7 1 21 1215 1235 1215 1236 0.95
Sequence Information
- Coding Sequence
- ATGGAATTCGTTACCGAGTTTGATTTAACCAATCAACAGATTGTTCTATTGAATGGCATTGATATTGTGTCGGGACGCGACAGTCCCACCGATTTCATCAATTGTCCCGTTGGTGACTTAGGACTCGAGCAAATACAGTATCCTGAGTGCATCTTAGATGAAACAAACAATAATCCATCGAATGGTGACGGGCACCAGCAACATCAATTCCAAATCATAAAACAGCGGAACGGCAATCGCTATATGAAATtcaagaaatcgaagaaaaatgtgaaaacaaaaCTTGTTGATCAACAACCACAACAGTGTCCTGTCGCACCGTGCCGGGCAGTATTTaccagtaaattgaaattgagaaaACATGTCCAGGAGCATGCATTCAAGAAGCAACATCGCTGCGACACTTGTTTTGAAGAGTTTAATGTGCTGGAAAACCTTATGCTGCACGCATCGTTACATTCGAATGATGGTCGTTGTCCGCAATGTGGGAAAGTGTTTCGACGATTGGCCAGCTTGGAAGGGCACATCAAAACTCATTTCAAAAATGAATACTACACATGTACGCAGGGCTGCGGCGAAATGTTCCCTCTGGAATGGATGTTAAAGCAACACATGAACCAATTCCATCCGACTGAAATTTCAAAAGACCAACAAGAAAAGGAAGAGCTAGCCAAACAGCGAAAACTTAAACGAAGGAATTTGCTTAGCTGTCAATACTGTGGCAAGCAATTCACCAAAAATTGCCTGCTGATACGGCACGAACGGATTCACAACGGTCAGAAACCCTTTGAATGTGATAGATGTGACCGAAGCTTTGCTCAGAAGAACACTTTGGTCATCCATCAACGGCGACATTCCGACCATCGAATGTATCAGTGCACACACTGTCCGCAAACATTCGTTCAGAAAGGGAATCTGCTGTCGCACATAGCCAAATGTCATACATACAAGGAGGGCGAGCCGAGTTTTCCGTGCAACCAGTGCTCGTGTACGTTCAAGAAAATCGGCACTTTGAACGCTCACATCAGCAAGTTCCATGCAGCGCAGAGCGTACTGGTCGACGATGATCTTGGATTTAAATTGGACGATGTGATGAAGGAACTGAACGATCTGCATCGATCAAATTCTTTGGAGAATGAACTGATATCGAAGGATCTGTTTTTCAATCTTCCCGTTATTATGCCGCCGGCAACATCCGAAGAGATTCAAAATGCGGTAGTCGGTGGCGATAAACAATCGGAATATGCAAACACAACGAATGCTACACAAAGCTCACTAAAACTGGCTGTTCATACGAGCAACGGAATGGTTACCCATCGCAGTGTAATGCAAAGAATTTATGGGAATATGCGCTGCTATGTGTGCCTGTACTGCCCGAAAGAATTTCGTCGTCCCTCTGACCTTGTTCGTCACATACGCATTCATACAAAGGAGAAGCCATTTTCCTGCCCGATTGCGAATTGTGGCAAGAAATTTTCGGTCAAAAGTTCGCTGAGCAAACACCTCAACACCCATTCGAAATCGTCACAGCAACACGCCTGCGGTGTATGTATGCAGACATTTCCGAGCGCCGAAACCTTCGACGAACATTGTGCGCTGAAACACCAGGACAATCCAATATTTCAATGCTTCATTTGTTCGCGACTGTGCGTCACAAATGGGGAGCTGAAGCGCCACTTAAAATGTCATCGATCGCCGGTCAAAGCTAAAAAACCCGTACGGCAACAGGAATGTGACGACGATGGTATCCAACTGGAGATTGTTATGAAAGAACCGATAATGTTGACCGACGATGGACAAATTGAAGTGACGGCGGAGAAACCTGTACCCGATCAGGAGCGAAAGTTTGAGTGCTCTGTGTGTCCTAGTACATTTAAGCGGAACAGTCATTTAAAAGAACACATTTTGTCGCACCTGGGCGTTAAAGCTCATAAATGCGAGATATGCTTAAAGTCCTTTGGTAAAATGAGCATCTTAAATCGACACATGCTGTATCACTCCAACGAGAAGAAGTTCAATTGTGGAACGTGTAACGCCAGCTTCATCTCAAACAATCAACTGAGTCGACACAGCTTGAAACATACAAGCCAAAGAAATGTCATGTGTCCCTATTGCCAGAAGCGCTTCAAAAGCAAAGCAACATGCCGCACCCATTTGCAAATCCACAAAACCCAGTGGATGAAGCAGTTCAAAGAGCAATTAAAATCGGGAACAATTCAGTTCGAAGAGGACGTGACGCTCGGTCAACCGAACGACCAGCCTGCACTCGATGTCGTGACATCGGCCACAAATGAACACCTGTTGCAATCGTTACACAATGACAACACCGATTCGTTTCACGAAACGGTCCAACGCAACGACGAGAGTAACCAGGTTTTGTTCACCAATTTGGTGCAAGACGCTCAGATGGACGACTCACGAAATCAGTTCGAATATTTCCTGTTGTTGCCTTCAAATGGCGATCCGAATGGCATTACAACCGGTGCCGACGGTAGATCGGATGGTGAACAGCAGTTCGTTGTGGACGATGATCAGCTCAATTTTGCCAATTTACAATTCATTCGGCTGGATCAGTCGGCCTTGTTAGAATTGGAAAATTCTGCAACGGAAACCGTTATTTCTATGGCAAAACATCGACTGAATGACAATGAGTTGAACCGACCGGAAATGGTTTTGAATACTGATTGTAATGAGTCACAAGTGCCTGTACCTGAATCTACACGACCTACAAATGTCGACGTGTCAACGGAATCGTCGAAAGAAATTCAATTGGCGAACAAACCGTTGGCTAATGTCCAGAGGACTAGAAAGTCCACAAAGTCTATCAACAAATGCGAGAcctgtttgaaaattttcaaaaaaccaaTTGATCTTCGGCGACACATTCGGACCCATACTTTAGAAAAGCCTTTCAGCTGTTCCAATTGCCCGAGATCGTTCAGCCTCAAAAGCACCTTACAGAATCACAACAAGAACAAACACTCCGACATGAAAGAGATGCATCCCTGTACGGTCTGTTGGAAGGCATTCTCGTCAAAACATGCGGTCATCACCCATTCGCTAATCCATTCCAATTCGCGTCCATTCAAATGCGAGTACTGCACGACGACATTTCGAACGCGTGGCCATTTGAAAATCCATCAACAAATCCATCTGAGGGAAGGACGCAAGTTGGGTGTGAATCCGTCGGagattaaaacgaaaaaagagAAAGCGAAACTATTGCCGCTGATGAATGTGGTGCAAGAGTTCGGTGACCCGACTGTTTACGAAGAGTTTGTCGATCACAATGGATTCGTTGAGGAAATGCCAGATTCAACGGTATTTAGAGTGGAACGATCGGACTCTGACACGGGAAATCACATAGTCAATACCGAATCTCTAACACATACAATTTACCAGTGCTCCTTTTGTCCGGAGCAATTCAACGACAAGGACAATTACAGTGCCCATGCAGCTAGCCACAAAGAAAACCTTCGTTGTCCTGATTGTCAAAAAGTGTTTACCAAGCCAAGCCTTCTGAAGCGACACATGATTGTGCATTACGGTCGAAAGGAATTTACGTGCAAAATTTGCCAAAAATCTTATACTCAGAAAGCGACACTGCAAGCACATATGGGTCTGCACACGGACGGCGCTTCGTTCGAGTGTTCACAGTGTCacaaaaagttcaatttcaaaacgaatcTTACGACCCACGAACGACAATGCATTTTGTTGAACAACCAGACACCTTCGGAATATAACATCGGAATCTCGtaa
- Protein Sequence
- MEFVTEFDLTNQQIVLLNGIDIVSGRDSPTDFINCPVGDLGLEQIQYPECILDETNNNPSNGDGHQQHQFQIIKQRNGNRYMKFKKSKKNVKTKLVDQQPQQCPVAPCRAVFTSKLKLRKHVQEHAFKKQHRCDTCFEEFNVLENLMLHASLHSNDGRCPQCGKVFRRLASLEGHIKTHFKNEYYTCTQGCGEMFPLEWMLKQHMNQFHPTEISKDQQEKEELAKQRKLKRRNLLSCQYCGKQFTKNCLLIRHERIHNGQKPFECDRCDRSFAQKNTLVIHQRRHSDHRMYQCTHCPQTFVQKGNLLSHIAKCHTYKEGEPSFPCNQCSCTFKKIGTLNAHISKFHAAQSVLVDDDLGFKLDDVMKELNDLHRSNSLENELISKDLFFNLPVIMPPATSEEIQNAVVGGDKQSEYANTTNATQSSLKLAVHTSNGMVTHRSVMQRIYGNMRCYVCLYCPKEFRRPSDLVRHIRIHTKEKPFSCPIANCGKKFSVKSSLSKHLNTHSKSSQQHACGVCMQTFPSAETFDEHCALKHQDNPIFQCFICSRLCVTNGELKRHLKCHRSPVKAKKPVRQQECDDDGIQLEIVMKEPIMLTDDGQIEVTAEKPVPDQERKFECSVCPSTFKRNSHLKEHILSHLGVKAHKCEICLKSFGKMSILNRHMLYHSNEKKFNCGTCNASFISNNQLSRHSLKHTSQRNVMCPYCQKRFKSKATCRTHLQIHKTQWMKQFKEQLKSGTIQFEEDVTLGQPNDQPALDVVTSATNEHLLQSLHNDNTDSFHETVQRNDESNQVLFTNLVQDAQMDDSRNQFEYFLLLPSNGDPNGITTGADGRSDGEQQFVVDDDQLNFANLQFIRLDQSALLELENSATETVISMAKHRLNDNELNRPEMVLNTDCNESQVPVPESTRPTNVDVSTESSKEIQLANKPLANVQRTRKSTKSINKCETCLKIFKKPIDLRRHIRTHTLEKPFSCSNCPRSFSLKSTLQNHNKNKHSDMKEMHPCTVCWKAFSSKHAVITHSLIHSNSRPFKCEYCTTTFRTRGHLKIHQQIHLREGRKLGVNPSEIKTKKEKAKLLPLMNVVQEFGDPTVYEEFVDHNGFVEEMPDSTVFRVERSDSDTGNHIVNTESLTHTIYQCSFCPEQFNDKDNYSAHAASHKENLRCPDCQKVFTKPSLLKRHMIVHYGRKEFTCKICQKSYTQKATLQAHMGLHTDGASFECSQCHKKFNFKTNLTTHERQCILLNNQTPSEYNIGIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245620;
- 90% Identity
- iTF_00245620;
- 80% Identity
- -