Bodo013900.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- SMARCC2_1
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000584.1:1339056-1342168[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 3.1e+03 -1.8 0.0 33 43 200 210 197 212 0.88 2 2 6e-14 7.4e-11 41.8 0.2 3 44 641 682 639 684 0.95
Sequence Information
- Coding Sequence
- ATGGTGTCATTGGGTCCAAAAAAGGACGGAGGACCGAACAAGGAGTTCTTCGAATCGCCAGAATCAATGCAAGGCTTCGAGCAGATTAGGTTATGGTTgactaaaaattgtaaaaagtACATCCAAACTGATCCACCCACCAAGGATTATTTGAGTAAActgattattgaattcattgAATATCAAGAAAAGAAATTCGGTAAAAATGCTACCGAACATCTACTCACCAGATTGCCGATGCGCTGCTTTCTCGATTTCAAACCGGGTGGTAGTCTTTGCCACATATTCGCCAACATGTATCGCTATAAGGCCGAGCAACGGTGgcgtaaatttgattttaccaTATCCAAAAATCCAATGCGGAAGGATCCAAACGTTCAAATGTTAATGGAAATTGAAACGGCCCTCATCGAAGCCGAATGCTTTCGAATGCCCGTCGTGTATGTACGGCCAGACGTTGAAAAGACGTTGGCAAGCAAAGTAAAGTCGATCATAACCGAACATCAGGGCGAAATTACGGAAGATGAAGAGGAAGCGTCGCACATTGTTTGTCCAATTGTCGAACCACTTCCTGAAGATTTTGCACGGCCAACATTTAGACGTGGCAATCACATTATGATCCATTGGTATTATTTCCCCGAGTCGTATGATTCGTGGGTCCCAAATACATTTGATTTACCCGACATCATTCCTGAGAATCCAGCGTCACCAGAAAATCGTTGGAGAGTCTCCGCGTCGTGGGTTCTAGACTTAGATCAATACAACGAATGGATGGCTGAGGAAGATTATGAAGTTGATGAAAAGGGAGGCAAGAAAGTACACAAACTGCGTCTATCTGTTGAAGAATTGATGCCCATTGGGCCGGACGATAAGCGAAAGCCTGTGGCGGGGAGTAGTAAACAAAAACGAAAGCGATCACCGTCGCCTCCACCACCAAAAGGAGCAAGCAAAAGGAAGAGTGGTAGATCCCCTGCTGTTTTCCAACGGAAAGGGCGAAGCGGTGAAGGTGATGATGAAGAAGATTTGACGCGTGACATGGAAGATCCAACACCCGAACCAAACATTACCGAGGTAACTAAGCCTCCAGCTACTCCATTGACAGCAGCAAGTCCTGCAACGCCACAGTCTACGAAACAGAGGGATACAGACATGCTGCCAATCAAAGGTGGAACTGTAACCGATTTGGACGAGGATATGGAGCGAACTGGAGGAGAAGATTCTCAAACGGCTAAGACCAGCGAAAATAGCAACACCCAAGAATTTCCACCGAACAAAGATGATTTGGAGGATAATGTTACTGAGCAAACGCATCACATCATCGTTCCATCTTATTCAGCTTGGTTTGATTACAATTCCATCCACGTCACCGAAAAACGAGCGATGCCCGAATTCTTCAACGgaaaaaacaaatcgaaaactCCGGAGATCTTCATGGCATACCGAAATTTTATGATCGACACGTACCGCTTAAATCCGACAGAATATTTAACAAGCACAGCATGTCGCCGAAATTTGGCTGGTGACGTTTGCGCTATAATGCGAGTTCATGCATTTCTGGAGCAATGGGGACTgatcaactatcaaattgatgcAGAGTCTCGTCCGACTGCAATGGGACCACCGCCCACatctcattttcatattctCAGCGATACACCATCGGGATTGCAGCCTCTTAATCCTCCCAAAACAACTCAACCATCAGCTGCAAAGGCTCTTTTTGATttggataaaaacaaaaaagaaaaagacgTCGATGCTTCTCCATCGGGTGTCGCTACCACTGGACCATCGGCAGCTCCACCAACTGTCGTCAAAACTGAATCTGGCGAATCGAATGGTCAATTTGGACTGAAACTGGATCAGTACTCAAAGAAACCGTCAGCACTGAAAAATAGGACCGCAGCTGGTATGTCCCGTGAATGGTCGGAACAGGAGACTCTACTACTATTGGAGGGTCTCGAGATATATCGTGATGACTGGAACAAAGTGTGTGAACACGTCGGAACTCGAACACAGGACGAATGTATTCTACATTTCTTGCGTTTGCCGATCGAAGATCCGTACTTGGAGGACGACAGTGGATACTTGGGACCGTTAGCTTATCAACCAGTACCATTCAGCAAATCTGGTAATCCAATTATGTCGACTGTCGCATTTCTTGCGTCTATTGTCGATCCAAGAATTGCTGCAGCTGCAGCTAAAGCAGCAATGGAGGAATTTCGCAACAATTAG
- Protein Sequence
- MVSLGPKKDGGPNKEFFESPESMQGFEQIRLWLTKNCKKYIQTDPPTKDYLSKLIIEFIEYQEKKFGKNATEHLLTRLPMRCFLDFKPGGSLCHIFANMYRYKAEQRWRKFDFTISKNPMRKDPNVQMLMEIETALIEAECFRMPVVYVRPDVEKTLASKVKSIITEHQGEITEDEEEASHIVCPIVEPLPEDFARPTFRRGNHIMIHWYYFPESYDSWVPNTFDLPDIIPENPASPENRWRVSASWVLDLDQYNEWMAEEDYEVDEKGGKKVHKLRLSVEELMPIGPDDKRKPVAGSSKQKRKRSPSPPPPKGASKRKSGRSPAVFQRKGRSGEGDDEEDLTRDMEDPTPEPNITEVTKPPATPLTAASPATPQSTKQRDTDMLPIKGGTVTDLDEDMERTGGEDSQTAKTSENSNTQEFPPNKDDLEDNVTEQTHHIIVPSYSAWFDYNSIHVTEKRAMPEFFNGKNKSKTPEIFMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAESRPTAMGPPPTSHFHILSDTPSGLQPLNPPKTTQPSAAKALFDLDKNKKEKDVDASPSGVATTGPSAAPPTVVKTESGESNGQFGLKLDQYSKKPSALKNRTAAGMSREWSEQETLLLLEGLEIYRDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDSGYLGPLAYQPVPFSKSGNPIMSTVAFLASIVDPRIAAAAAKAAMEEFRNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265712;
- 90% Identity
- iTF_01265712;
- 80% Identity
- -