Bodo013228.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- Rel
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000108.1:3643728-3646766[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-44 1.2e-40 139.0 0.4 1 168 85 267 85 268 0.93 2 2 2.2 7.1e+03 -3.4 0.0 60 87 398 426 386 437 0.67
Sequence Information
- Coding Sequence
- ATGACAACCTTATTGAATCTAGACACTAATCGAAGTGAAATTGTTTATGATAGAACCAACTATTTTCAAAGCCGTTCACCAGCTTCATCCGTCCTATTAACCGGCAGCGAATCAGATTCGAGGATTTCATCTTCACCATCGGCATCCGAGTATAGTTACAGTGATTCATCGAATGCTTTCGCTATGGAAACACTAAATTTAGTTGAGGAATCCTCAGTTTCGTACATGGAAACTGATGGTAGCAGACCTTACATAAAAATAACAGAACAGCCAATTGACAAATTTCGCTTCCGTTATAAATCGGAAATGCATGGCACTCACGGTTGCCTGAGCGGTTTATCTACGAACAAAGTTAAGAAAACCTTTCCCACCGCtcaattgatgaattttcatgGAGAGGCGATCATCAGATGTTCACTGTTTCAAGTCGATACGCTGACCAAACTTCACCATTCCCACAGTTTGGTGGTCAGGAAAGACAACGATGACATAAAAGATCCACATGACGTTGAAGTGTCACCAAGCAAAGGCTATACGGCAGTTTTTGTTGGAATGGGAATCATTCATACCGCGAAAAGATTTATCGTCGAAGAGCTCCACGAAAAACTTGTCCGAAGGTCGACATTTGAGAAGGGAAGAGAAATTACAGAGCGAGAAAATCAGCAACTTCTCACCAGGGCCGAAAGTGAAgcgaaaaatatgaatttgaaCAAGGTGTGCTTGTGCTTCGAAGCGTTCCAATTAATCGACGACAACTGGGTCAGCATATGCGAACCAGCATTGTCCAATCCAATAAATAACATGAAGAGCGCTCTGACCGGTGAACTGAAAATAACCAGACTCAGTACAAACATCAGCGAGGCGAACGGTAACGAAGATGTCTTCTTGtttgttgaaaaagtcggaaagAAAAATATCAAAGTTCGCTTCTTCGAAGTGGACGAAAACGATGAACCGATATGGGAAGAATGGGGTCGATTTTCCGAAGTGGACGTTCACCATCAATATGCAATCGCACTTCGTACGCCACCATACAAGGACAAAGACATTGAGGAAAATGTTAATTGTTTCATTCAGCTAGTTCGTCCATCCGACCAGTGCTTTTCCGATCCCAAGCCCTTCCGCTATAAGCCCAGTCGTTCGGTGAGCTCAAGGAAGCGAGCACGGCTGAATACCCCGTTCAGTTCAGCCGAATTACCAACCACACTGCACGAAATGCAAACGATATCCAAGGAATTCAACAAATCAGGAATCATTGCCGATGTTATCAATCAGAAAACGGATTCACACCAAGAaagtttcgataattttttgaaatttttatcgaaCGAAATGAACGAGGATCTGGACTCGCTGATCGATCCGAATGAATTATTGGATTCAAAGGAAATAAGTAAAGAGCTGAAGAAGCTAGGTACATCGAATGGGCTGCTTAAAACGGATGGTGTCGCTGTGCCGAATACCGAAGAGTCTTCAAATGAACTATGCAAAGAATTGCTCATTCCGTTGATGCACAAAATCATAATTCGAAATTCCGCTGACGTAGCCGCTGACAAGATCAGAAGTTTATTCGCTTGTGAATACGAGAACGGTCGATTCATTATAGACTACTTGGTCACATACAATCCAGCCCTTTTCAAGTTATTTTTGACTTACGTGGAAAGACTCCGTATGCCAGACCTGTTGGAATACCAGAATGATCGGAAGAAGTCGTGCTTTCACATTGTTTGCGAAAATTGTCAGTCCGACGCTATTATGAGCATTGTTCCAACATTAATTCGCTTAGGTGCTGATCCAAATGTAACCGACTACAAGGGCGACACCGCTCTGCATGTTCTCATTCGCGACGACAAGTTGTTCAAATGTGCCGACCTGTTTATAAACGGAAAGCTATCCGAGCCATCGCAAACTGAATCTTGA
- Protein Sequence
- MTTLLNLDTNRSEIVYDRTNYFQSRSPASSVLLTGSESDSRISSSPSASEYSYSDSSNAFAMETLNLVEESSVSYMETDGSRPYIKITEQPIDKFRFRYKSEMHGTHGCLSGLSTNKVKKTFPTAQLMNFHGEAIIRCSLFQVDTLTKLHHSHSLVVRKDNDDIKDPHDVEVSPSKGYTAVFVGMGIIHTAKRFIVEELHEKLVRRSTFEKGREITERENQQLLTRAESEAKNMNLNKVCLCFEAFQLIDDNWVSICEPALSNPINNMKSALTGELKITRLSTNISEANGNEDVFLFVEKVGKKNIKVRFFEVDENDEPIWEEWGRFSEVDVHHQYAIALRTPPYKDKDIEENVNCFIQLVRPSDQCFSDPKPFRYKPSRSVSSRKRARLNTPFSSAELPTTLHEMQTISKEFNKSGIIADVINQKTDSHQESFDNFLKFLSNEMNEDLDSLIDPNELLDSKEISKELKKLGTSNGLLKTDGVAVPNTEESSNELCKELLIPLMHKIIIRNSADVAADKIRSLFACEYENGRFIIDYLVTYNPALFKLFLTYVERLRMPDLLEYQNDRKKSCFHIVCENCQSDAIMSIVPTLIRLGADPNVTDYKGDTALHVLIRDDKLFKCADLFINGKLSEPSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -