Bcop015522.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:4939981-4942243[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 1.8e+03 -1.0 0.1 26 50 81 105 54 107 0.80 2 10 0.75 1.3e+03 -0.6 0.0 22 44 118 140 112 145 0.85 3 10 0.59 1.1e+03 -0.3 0.2 26 51 150 175 140 177 0.84 4 10 0.0011 2 8.4 0.0 22 45 202 225 193 228 0.89 5 10 9.8e-05 0.18 11.8 0.2 16 44 225 253 221 262 0.88 6 10 0.32 5.8e+02 0.6 0.0 18 45 254 282 253 287 0.78 7 10 0.0011 1.9 8.5 0.0 22 45 287 310 283 316 0.87 8 10 1.7 3e+03 -1.7 0.0 18 44 312 338 310 347 0.72 9 10 0.084 1.5e+02 2.4 0.1 23 46 345 368 341 374 0.83 10 10 0.024 42 4.2 0.1 23 50 403 430 390 432 0.87
Sequence Information
- Coding Sequence
- ATGGCTAGCGAATCTAAAAATCCAACAAAGGGATTAGGGCGGAACAATATAAAAGACAATAATGCAGTGACTGAAGGCAGTATGGTCGGCGATGTTCGCAAACGCAACGATAAGAAGGCTAAAGTGCGTCCTAAAGCGAAGGATACCGATGGTTCCATTAGATGCGTCGTCTGCTTAAAACAATTCACGCACAAAAGTCACGTCCAGAAGCATATGAGAGATGAACACTACAAATCGTTTGAGTGTGATATCTGTCATGGCACATTTACCACCCTTTCGACGATGAAATCCCACTTGATGAAAATGCATATTGCGGGAAGTTATATAAAGCAGGAAGTTCCAGATTCGGATAACAAACCGTTTAAGTGTAATGAATGTCCTGCATCTTTTAAAATTAGTAGTAAATTGAAGGGACACATGCTAAGCCATAGTAACGACCGATCATTTGAATGCGAAATGTGCGATCGGAGCTTCAAACACCGAGAAAGCTTAAATAATCACATCCAAATTCATCACATGGGCAAACGTTACATGTGTGAAATTTGTAACTCGGAGTTTACGTCGAAGTCGAATCTTGTGACCCACACGAGAATGCATAATGGCGATCGACCGTTTAGCTGCGAAATTTGTTTTGCTAACTTCGCTAAGAAAAGTAATTTAACGGCACATTTACGAACACACAACGATGGCGAGAGACCATATGTATGTGACATTTGTGCGGCTGCGTTCAAAAATTCGTCTCACTTAACTCGTCACAAGAGAACCCACAGTGAAGATCGTCCTTACAAATGTACTGATTGCTTTGCTGGTTTCAAATCCCCAGATCTTCTTAAAAATCACATGACCATCCATTCCAACGAGCGTTCATtcaagtgcgagctatgttcCGCAACttttaaacagaaaaagaaTTTGAACAGCCATTTGAAAACGCACTCCAAGCAGGAGCGATCGTTCCAATGCAATGTGTGTACAGACGCGTTCGCTTCTCAGATTGCATTGACTAAACATATGCTTGTACATACTACCTGTCGACCTTTCGAATGTGAAATTTGTTTGGCTAGTTTTAAAGAAGCTGGTGCAAGAATGCGTCACATGAAGATACATTTAGACGACCGAAAGATCTACGAATGCGACATTTGCTCTAAGAAATTCATGCATTTGTATTCGCTAAAATCTCACGAGCAATTGCTTCATCTGAAAGACAATCCGTACGAATGCAGCAAATGCAAGAAGAAATTTGGGAATGGAAAAGCCTTACGTAGGCACCTTAAGCGAATTCACAATGCTACTGAGTTGAAGGATAATGAAAGATGTGCCGATGACACACATATCTTGAGCTTGGACGATATTAAACGCGAACCGAAACTTTTGAGTTAG
- Protein Sequence
- MASESKNPTKGLGRNNIKDNNAVTEGSMVGDVRKRNDKKAKVRPKAKDTDGSIRCVVCLKQFTHKSHVQKHMRDEHYKSFECDICHGTFTTLSTMKSHLMKMHIAGSYIKQEVPDSDNKPFKCNECPASFKISSKLKGHMLSHSNDRSFECEMCDRSFKHRESLNNHIQIHHMGKRYMCEICNSEFTSKSNLVTHTRMHNGDRPFSCEICFANFAKKSNLTAHLRTHNDGERPYVCDICAAAFKNSSHLTRHKRTHSEDRPYKCTDCFAGFKSPDLLKNHMTIHSNERSFKCELCSATFKQKKNLNSHLKTHSKQERSFQCNVCTDAFASQIALTKHMLVHTTCRPFECEICLASFKEAGARMRHMKIHLDDRKIYECDICSKKFMHLYSLKSHEQLLHLKDNPYECSKCKKKFGNGKALRRHLKRIHNATELKDNERCADDTHILSLDDIKREPKLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245638;
- 90% Identity
- iTF_00245638;
- 80% Identity
- iTF_00245638;