Bcop007211.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:455020-465162[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.13 2.4e+02 1.8 0.2 23 50 43 70 40 74 0.80 2 9 0.69 1.2e+03 -0.5 0.0 25 47 73 95 67 96 0.79 3 9 0.39 7.1e+02 0.3 0.4 15 45 156 185 150 188 0.77 4 9 0.0021 3.7 7.6 0.0 21 52 189 220 183 221 0.86 5 9 0.23 4.2e+02 1.0 0.0 21 44 217 240 215 244 0.87 6 9 9e-05 0.16 12.0 0.1 21 48 245 272 241 281 0.86 7 9 0.31 5.6e+02 0.6 0.0 21 48 273 300 270 305 0.78 8 9 0.0021 3.7 7.6 0.0 21 46 301 326 293 329 0.91 9 9 2.4e-05 0.044 13.8 0.1 21 46 329 354 327 359 0.91
Sequence Information
- Coding Sequence
- ATGGTTTTGGATATAGAAAAAGGAATTCACTCATCCAATCAGAATGAGCATGTTGATGATGAGGTGAAAAAtagtgatgatgatgatggcaTAACAACGTACGTGGAGAATCTTCCACCTGAGTCGAGACCATACGTCTGTCCAGTGTGTGGCAAGCGATACGTTCAAAAGTACTTTTTGATCGCTCACATGGACATTCATAACTATGAAAAGAAATTCGAGTGCTACATTTGCAAGCAATCATTTTGGCTGGAACGCGATCTATTCAAGCACATGAATACTCGTTGCGGCAGAGATGTTTCACCGGTGCATGAAATACCACCACATCGAAGAAACCCGAACGCTAAGCAGTCGGGAAGTACGGCACGAAAGAAAAAGGTGGGCGATTCAAAGCACGATAAGAAAGATGACGGAAAGGGTTGTGCTCGAAACGTAGAAAGCAGCGCCGCTTCATCAAAAAGCTCGCCAAACATTCGACGACAATCGAAAACTTACTCCTGTGCAGAGTGTTACAGAGAATTCAGTCGAAAGGACAGTTTGGCCAAGCATTTAAGGGTCCACAGTGGGGAGAAGCCGTTTGAGTGCGGAGTTTGTAAGAAAGCTTTCAGTCAATCTAGCACTTTGACCAGCCATCTTCGGATTCATACTGgTGAAAAGCCGTTCGAGTGTGGGGTTTGTAAGAGAGCTTTCGGTCGAAGCCACCATTTGATCGACCATCTCCGAACTCATACTGGGGAGCAGCCGTACGAGTGCGGGGTTTGTAAGAAAGCTTTTCGTCGTACACAGAATTTGACCAGCCATCTCCTGATCCATACTGGGGAAAAGCCGTACGAGTGCGGGGTTTGTGACAAAGCTTTCATTGAACGTACTGATTTGACCAGCCATCTTCGGATTCATACTGGTGAAAAGCCGTTCGAGTGTAAAGTTTGTAAGAAAGCTTTCGGTCGAAGTCACGATTTGACCCGCCATCTCCGGATTCATAATGGTGAAAAACCATTTGCATGCGACATttgcaaaaaaacatttcgacaAAAGGTGCACATACGGAGACACATGAACATTCACATTCCAAACAAACTTACAAGTGCAAGGTGTGCAAGAAAGTGTTCCACCAGCGACACATTCTGTCCGAGCATCGTAAAGACCATGAAGCAGAAAATTAATCGAGAAGTCGCAGAGAGTTCGTGA
- Protein Sequence
- MVLDIEKGIHSSNQNEHVDDEVKNSDDDDGITTYVENLPPESRPYVCPVCGKRYVQKYFLIAHMDIHNYEKKFECYICKQSFWLERDLFKHMNTRCGRDVSPVHEIPPHRRNPNAKQSGSTARKKKVGDSKHDKKDDGKGCARNVESSAASSKSSPNIRRQSKTYSCAECYREFSRKDSLAKHLRVHSGEKPFECGVCKKAFSQSSTLTSHLRIHTGEKPFECGVCKRAFGRSHHLIDHLRTHTGEQPYECGVCKKAFRRTQNLTSHLLIHTGEKPYECGVCDKAFIERTDLTSHLRIHTGEKPFECKVCKKAFGRSHDLTRHLRIHNGEKPFACDICKKTFRQKVHIRRHMNIHIPNKLTSARCARKCSTSDTFCPSIVKTMKQKINREVAESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245664;
- 90% Identity
- iTF_00245664;
- 80% Identity
- iTF_00245664;