Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:2694919-2705373[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.8 2.1e+02 2.6 0.3 2 23 5 26 4 26 0.93

2 14 0.0021 0.09 13.1 0.1 1 21 922 942 922 945 0.88

3 14 0.037 1.6 9.2 0.7 1 23 1038 1060 1038 1060 0.98

4 14 0.00034 0.015 15.6 2.2 2 23 1063 1084 1063 1084 0.97

5 14 3.5e-05 0.0015 18.7 0.9 3 23 1092 1112 1090 1112 0.98

6 14 1.3e-05 0.00056 20.1 4.8 2 23 1119 1140 1118 1141 0.95

7 14 5.6 2.4e+02 2.3 0.3 6 23 1155 1172 1153 1172 0.96

8 14 0.018 0.76 10.2 5.6 3 23 1179 1200 1177 1200 0.95

9 14 0.018 0.78 10.2 0.3 2 23 1213 1233 1212 1233 0.94

10 14 1e-05 0.00044 20.4 1.2 1 20 1239 1258 1239 1261 0.94

11 14 8.2e-06 0.00036 20.7 1.0 1 23 1269 1291 1269 1291 0.99

12 14 0.00019 0.0083 16.4 4.1 1 23 1297 1319 1297 1319 0.98

13 14 3.3e-06 0.00014 22.0 2.8 1 23 1325 1347 1325 1347 0.99

14 14 0.23 9.8 6.7 4.3 1 23 1353 1375 1353 1376 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.8	2.1e+02	2.6	0.3	2	23	5	26	4	26	0.93
2	14	0.0021	0.09	13.1	0.1	1	21	922	942	922	945	0.88
3	14	0.037	1.6	9.2	0.7	1	23	1038	1060	1038	1060	0.98
4	14	0.00034	0.015	15.6	2.2	2	23	1063	1084	1063	1084	0.97
5	14	3.5e-05	0.0015	18.7	0.9	3	23	1092	1112	1090	1112	0.98
6	14	1.3e-05	0.00056	20.1	4.8	2	23	1119	1140	1118	1141	0.95
7	14	5.6	2.4e+02	2.3	0.3	6	23	1155	1172	1153	1172	0.96
8	14	0.018	0.76	10.2	5.6	3	23	1179	1200	1177	1200	0.95
9	14	0.018	0.78	10.2	0.3	2	23	1213	1233	1212	1233	0.94
10	14	1e-05	0.00044	20.4	1.2	1	20	1239	1258	1239	1261	0.94
11	14	8.2e-06	0.00036	20.7	1.0	1	23	1269	1291	1269	1291	0.99
12	14	0.00019	0.0083	16.4	4.1	1	23	1297	1319	1297	1319	0.98
13	14	3.3e-06	0.00014	22.0	2.8	1	23	1325	1347	1325	1347	0.99
14	14	0.23	9.8	6.7	4.3	1	23	1353	1375	1353	1376	0.93

Sequence Information

Coding Sequence: ATGGACCAATTACAGTGTCCAGTATGCACACTATTCCTACATGTGGGCATGGACCTGCAATCCCATCTGGACACCCATCCGAAAGATCAAGTGATCAAAGCATTGGTAAACATAACAATGACAAAACAAGTCACCGATCCAAATTCGACATCAGACCCACAGCACAGCAAATATGCACCGATTGCAGAAAATGCTTTTACTCAGGAAgtgaatcaatttttaccGGAACCGATTCCCCGTCGACCACAACAAGTTTTATTTGGTTACAGTTGTAGTACTCGCGTATTCCGAGAGGTTCCCACCCAACAATCCAcgacaacacaaaaatttgtcaCAAATGCATTACCCGGCAGTCATATTGTTCCGGCCATCGCAACACAGGCATCGTTTGCAGGTCAACAAAGTCAAAAATTCCCACCACCTCCATATGGATCAATTGTAGCGAAACGTGCCATCGAACCACCCGTTCAAGCACTTTCATCGACCAATACATACAAATTGACGTCGCATCAAGTCGGTATAAGTAGTCAACGAAATGGTACCCTCTATCTTCCAGTGGAAAATGTCGATGAAGTGGAAGCGGTTGGTGAAGAGCACATCGACGACGATTACACACAGCAGGCTGATCCAAATATCGAGTACATTGAACACGCTGACGAGTATTTGGAAGACGATGGCGAGAATCAGGATGACTGCGCCACATACGAGAATGAGAACGTGGATCCGTTGCAAGACAATCGAATAATTCGACCGAATTCGGTCATTTACATCAATGACGATGAGCCCATCGATGTCAAGCCCGATGCACACAATCAGAAAAAATTCACTGAAGGCCTAAGGGTACTGAGTGACGTAAAGTTGCCAGCTCCAGTGGATATAACCAATTTGGATTGTAAATTCGGCGAATCGTTCAAATTGGACGATGTGTTGTGTACACGGCTGCAAACGGATAGTGGTCCCATCGAAGTGGATGAAAATACGGACGATGAAAGTGAACCGGTTGTGGTTGGTGTTAGTAACAGTGAATTTGAAATGTTGGGCAGTGTTGTGGATGTTAAGCCGAAATTTGACACGGCAGTGAAATGTGAAATTGATGTTGCAATGACGATAAAAAGTGAACTCGAAGGAGACAAACAATCGTACCAGAATGCCGATGAGGTGATCCACGAGAAAGAAATCTTAAATGCCAATCGCAGTATTATTGTCCTACCAAAATCTCCATTGCCTACAACCAGTTACAGAACGTTAGCGAAGCCTTTTAATTCGTCCGAAACGTCATCACCTTCACCTCGTCCCGAACAAAACTCTAGCTTAAGTTCAAACGATGCATCAAAAGCGGAATGTACAGCTGGCAAACAATCATCAAGCAAAGGCCTTACTCCACCTCAATCGCCAGAGCCAAATCCATGCGAGATCAGAATATCAAATGTGACGTCGATTGGCAAAACTAGTGTCATTCGATTAGCATCGCCAAAAAAACCGTCTATACCCGAAACGAACCCGAGACCACTGCTGAAAACGCCGTTCTCCAAGCAGCCAAAGAAGATAGTGGTGAAATTCAAGAAACCTTTCGTTCCAGTCGTCGAGGAAGACGCCAATCTTCAACCACCCGAAATAATTGTTCCGTCGTCACATGATGCGGTTTCGAAAGCCGCTGAAAATGACAGTTCGGAACAATCGACTTCGAAAGTCGATGAACCCGCTGACCAAACCAATCATCCGTTCAGTCCTTTGCGACAAACATTTACACCACCTCCACCAATTTATTCATTGATAATAAGGAATAGAGACGGCGATACGAATGTCGAGGAGATAGCTACATCTATTGTGGATTTATGTACAAAAGAATCAACATCAAATGTCGATGAAATCGCAGAATCGAGTGATTCGGTTGAAACCCCGACCACTGAGAAGGTAGCGAACGAGGACGACATGGACATTGATGTCACTGTAATTAACTCACACAAAGGTGATAGCGAAATCTTTACAATTGAGTTCAAAGACGACGAAAACGACATTACCGAATCCAAAGTTGACCTCGATGTCGTGCAAGTGAAAATTGACCATGATGCTATTCAAGTGAATCCAAAACCGATTTATCGAGACGATGAATCCATTCTACCCGACTGTAAGGACATTGTCGTTCTTCCCGAATCGTCCAGTACTGACTTGTCATCGTCATCCTCGCAGCCGACCACATCATCACAAACGCAAAACAACTTCAACGAAGCCGGCCCCAGTCGCATCGATTACGGCCTGTCGTCGTTTGAGGACTTTTATTCCAGCGTACGACTCTCACCGATTAACTTTACACCGGAAAACTATGCCTGGAATCAGCAATATGTTCCGTTCGACAATGAGAAAAATTCGTACATGGACTTGGACGTGTACAAAAATACCAATTCTTATGAGGAACGGGCGCCATCCACGGACAGTTTGAACATTCGAACGGATGAAAAGATGCCGGCCAAAGGGGAAATATCCGAGCAAGAAAGCAATGGTGACGTCGAGGGGTCGTCGTGGAGCCATCAGATGTATCCGCTACAAGACACGTTTCCACGATATCCGAGTTCCTATGACACAACTGTTGCCAGAGAGAGTTGGAGCTTGAGTAACGATCAAAATTTGCCGAACAATTCGGATAGTCCGGTGGTTTTGCCGAAATTCACATCATTGGAATCGGCGTACACCGATGTGAAGGGAACCTCTTCCGAAAATGGTTTAACGATTGACAAGTCAAAGCAATTTCGTACGCGCAAAAAATACCGCTGCCCCGAATGTCCGAAAGTGTTCACAATGCTCAAGGACAAACGGATTCATTTAGTAGCCGATCATGATTATCAAATTCCATGCCGGACGAAGAGCAAAATAACATGCACGTCGACGAGCGTAACGGCTAGCACCAGCATTAGTACAATAACGAGCGGTAGTAATTCGTTGACGGAAATTGACTTTAAGATCAAACAAGAGAATCCACTCAATCGCGACATGCCCGAAAGCATGAATCGTTACTTGTTGAACTACAATTACAACATATTGCGGGACCGATTGTCCAATGATATAAAAACAGAGCCGGTCGTTGAGGATGCGCCGACAGTCGATGCCAATTGTTATCAGTGTATGGTTTGCAAGGAGCAATTTTTCACTATCAAATCTTATGATGCCCATATGTCCATTCATCCTGCTGAATGCTATACGTGTGGCAAGTTCTTCAATCACTGGCTGAATTTGAGCATACATCTGAAGCGGCATTTGAATATACGAGATTATTGGTGCACGTACTGCAATAAGAAATTTGTGGTACGACAAAATCTGCTCGATCACATGAATACACATTCTGGAGAAGCTCCCTTACAGTGCAAAATTTGCTCGAAGCGGTTCCGGCGATATTCGAATCTGATTCAGCATCGCAACCGTCACCACCTAAAAATTCGACCGAAAGAAAAGGATTTCATTTGTTCGTGCGGCGAAGTATTCCACTCTGAAGCGAAAATAGCCTGGCACCGTGAGACGCACGataaaaaaccgaaatgtTGTCCGTATTGTCGAGAGCGATTCATGCACAAAAACAGTTTGTCGCGTCACGTGCGACTGTCGCATCCCGACAAGTTCGGTATATTCAAAGAGAACGCCGTCGAATGTATGATCTgcaataagaaatatttgaaatcgaGCCTGAAGGCGCACATGGTACTGCATACAAAGAAACGCGAATTCGAGTGTAGCATATGCAACAAGAGCTTCACATCGAAATGGAATTTAAAGCAACACAAATGGATCCATGCGAGTCGCTCGTCAAAGCCATTTAAATGTAACCTATGTACAAAAGCATTTATCCGGGAATCGGAGTACGTGTCACATATGAATACGCATAAGGCGATCAAACCGTATACGTGCGATCATTGCGGTTGCCAGTTCGCTCGAAAGTACAATTGGCTGCGACATGCACGCGAACACGAAACGCCGAAACGGTATCGTTGCGACGATTGCGGTAAAGTATTCCATCGCGCCTATTACCTCACCGAACACAAACGGTCACATACGGGAGAGAGACCGTTCGAATGCATCATCTGTGGTAAGAcgtcaacaacaaaaacgaatCACAACAAACATGTCAAAATTCATCACGCCCGAGATCCACTAACCGCTGAAGGATAG
Protein Sequence: MDQLQCPVCTLFLHVGMDLQSHLDTHPKDQVIKALVNITMTKQVTDPNSTSDPQHSKYAPIAENAFTQEVNQFLPEPIPRRPQQVLFGYSCSTRVFREVPTQQSTTTQKFVTNALPGSHIVPAIATQASFAGQQSQKFPPPPYGSIVAKRAIEPPVQALSSTNTYKLTSHQVGISSQRNGTLYLPVENVDEVEAVGEEHIDDDYTQQADPNIEYIEHADEYLEDDGENQDDCATYENENVDPLQDNRIIRPNSVIYINDDEPIDVKPDAHNQKKFTEGLRVLSDVKLPAPVDITNLDCKFGESFKLDDVLCTRLQTDSGPIEVDENTDDESEPVVVGVSNSEFEMLGSVVDVKPKFDTAVKCEIDVAMTIKSELEGDKQSYQNADEVIHEKEILNANRSIIVLPKSPLPTTSYRTLAKPFNSSETSSPSPRPEQNSSLSSNDASKAECTAGKQSSSKGLTPPQSPEPNPCEIRISNVTSIGKTSVIRLASPKKPSIPETNPRPLLKTPFSKQPKKIVVKFKKPFVPVVEEDANLQPPEIIVPSSHDAVSKAAENDSSEQSTSKVDEPADQTNHPFSPLRQTFTPPPPIYSLIIRNRDGDTNVEEIATSIVDLCTKESTSNVDEIAESSDSVETPTTEKVANEDDMDIDVTVINSHKGDSEIFTIEFKDDENDITESKVDLDVVQVKIDHDAIQVNPKPIYRDDESILPDCKDIVVLPESSSTDLSSSSSQPTTSSQTQNNFNEAGPSRIDYGLSSFEDFYSSVRLSPINFTPENYAWNQQYVPFDNEKNSYMDLDVYKNTNSYEERAPSTDSLNIRTDEKMPAKGEISEQESNGDVEGSSWSHQMYPLQDTFPRYPSSYDTTVARESWSLSNDQNLPNNSDSPVVLPKFTSLESAYTDVKGTSSENGLTIDKSKQFRTRKKYRCPECPKVFTMLKDKRIHLVADHDYQIPCRTKSKITCTSTSVTASTSISTITSGSNSLTEIDFKIKQENPLNRDMPESMNRYLLNYNYNILRDRLSNDIKTEPVVEDAPTVDANCYQCMVCKEQFFTIKSYDAHMSIHPAECYTCGKFFNHWLNLSIHLKRHLNIRDYWCTYCNKKFVVRQNLLDHMNTHSGEAPLQCKICSKRFRRYSNLIQHRNRHHLKIRPKEKDFICSCGEVFHSEAKIAWHRETHDKKPKCCPYCRERFMHKNSLSRHVRLSHPDKFGIFKENAVECMICNKKYLKSSLKAHMVLHTKKREFECSICNKSFTSKWNLKQHKWIHASRSSKPFKCNLCTKAFIRESEYVSHMNTHKAIKPYTCDHCGCQFARKYNWLRHAREHETPKRYRCDDCGKVFHRAYYLTEHKRSHTGERPFECIICGKTSTTKTNHNKHVKIHHARDPLTAEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246593;
90% Identity: iTF_00246593;
80% Identity: -