Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.056 1.3e+02 2.6 0.9 6 25 33 52 32 70 0.82

2 6 0.0016 3.8 7.5 0.7 18 38 154 171 144 176 0.81

3 6 0.0002 0.45 10.4 1.6 17 40 181 201 170 204 0.83

4 6 5.5e-06 0.013 15.4 2.1 17 39 209 228 201 235 0.85

5 6 0.01 24 4.9 0.1 15 39 235 256 230 260 0.73

6 6 0.095 2.2e+02 1.8 1.6 17 29 265 277 254 287 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.056	1.3e+02	2.6	0.9	6	25	33	52	32	70	0.82
2	6	0.0016	3.8	7.5	0.7	18	38	154	171	144	176	0.81
3	6	0.0002	0.45	10.4	1.6	17	40	181	201	170	204	0.83
4	6	5.5e-06	0.013	15.4	2.1	17	39	209	228	201	235	0.85
5	6	0.01	24	4.9	0.1	15	39	235	256	230	260	0.73
6	6	0.095	2.2e+02	1.8	1.6	17	29	265	277	254	287	0.76

Coding Sequence: ATGGTTTTGGATATAGAAAAAGGAATTCACTCATCCAATCGGAATGAGCATGTTGATGATGAGGAGAAAAATAGTGGTGATGATGGCATAACAACATACGTGGAGAATCTTCCACCGGATGAACAGCAATACAGGTGTTACATTTGCAAGCAATCATTTTGGCTGAAACGCGATCTATTCAGGCACAAGCACATGAATACTCGTTGCAACAGAGATGTTTCACCTGTGCATGAAATATCACCACATCGGAAAAAACCGAACGCAGAGGAGTCTGGAAGTACAGCGCGAACGAAAAAGGTGGGCGATTCAAAGCGGGATAAGCAAGATGACGGAAAGGATTGTACTCATCTCGTAAAAAGCAGCACCGCTTCATCAAAGAGCTCCTGTTCGGAGTATTACACAGAATTCAGGGACAAGAGCAATTTGACCAAGCAATTAAGGATCCAAATGAAGCCGTATGAGTGCGGGGTTTGTAAGAAGATTTTCAGGTACTCTAGCGGTTTGACCAACCATCGTACAATTCATACTGGTAAAAAGCCGTTCGAGTGCGGAGTTTGTAAAAAAACATTCAGTCGTCGTAACGATTTGACTCGCCATCTTCGGATTCATACTGGTGAAAAGCCGTACGAGTGCAAACATTGTATGAAAGCTTTCAGTCAATCCAGCACTTTGACCCGCCATCTTGGGATGCATAATAGTGAAAAGCCGTTCGTGTGCGGGGTTTGTGACAAAGCTTTCAGCCAACGGGGCGATTTGACTCGCCATCTCAAGATTCATACTGGTGAAAAACCATTTGCATGCGACATttgcaaaaaaacatttcgacaAAAGGTGCACATACGTCAACACATGAATGTTCACATTCCCAACGgtaaaaaaaaattacaagtGCAAAAAAGTGTTCCACCAACGACACATTCTGTCCGAGCATCGTAA
Protein Sequence: MVLDIEKGIHSSNRNEHVDDEEKNSGDDGITTYVENLPPDEQQYRCYICKQSFWLKRDLFRHKHMNTRCNRDVSPVHEISPHRKKPNAEESGSTARTKKVGDSKRDKQDDGKDCTHLVKSSTASSKSSCSEYYTEFRDKSNLTKQLRIQMKPYECGVCKKIFRYSSGLTNHRTIHTGKKPFECGVCKKTFSRRNDLTRHLRIHTGEKPYECKHCMKAFSQSSTLTRHLGMHNSEKPFVCGVCDKAFSQRGDLTRHLKIHTGEKPFACDICKKTFRQKVHIRQHMNVHIPNGKKKLQVQKSVPPTTHSVRAS

Sequence clustering based on sequence similarity using MMseqs2