Bcop007862.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:1056986-1060150[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.9e-06 0.0017 18.6 1.3 1 66 117 178 117 179 0.90 2 6 2 1.1e+03 -0.1 0.0 3 17 186 200 184 206 0.83 3 6 0.95 5.5e+02 0.9 0.1 34 55 207 228 204 233 0.85 4 6 0.024 14 6.0 0.1 1 14 252 265 252 273 0.87 5 6 5.2e-05 0.03 14.6 0.2 34 68 276 310 274 311 0.90 6 6 0.074 43 4.5 3.9 37 67 549 579 546 581 0.88
Sequence Information
- Coding Sequence
- ATGGCATCGGGTAAAAGAAATGCTCGTTTAAATAAGAGTTTGTTCAAACTGAAACAAGAAAAGGGAGTTGACGTCGATGAGGTCGAAGAAGATCTATCCGATGAAGATGATCAGCAATGGACCAAAGACGAGACCGTGAAGTTAATGGCATCGATCAAAACACAATTGAAGGAGCGTGACACCTATTCATACATCCGACGAATCCAACTGCTAAATTGGGATCAAGTGAAAATCGGCGAAAAATCGGTAAACGAATGCAAACGGCGTTTGCAATTCTTGATAAAGAAGATTCGTCATGTGAGGACTCTCGGTGAGATTTTGTCGGACGTAGATCTAGAACGGGTGGACGTAAAGAAACCGAAGTCTGCGTATGCCCTGTTTTGCGAGGAGATGAAAAACGGTGACCTGGACCTGAATGGAAATAACTTCTTCAAAGAAGCATCCGAACGGTTCAAGAAATTATCACCGGCTCGTAAAGACTTTTACGAGAAAGAATCGAGGCGCCAGTCGCTAATATACAAGCAGCAATGTCCAAAAGGCACCAGACGGAAACGGACTGATTTGACACCATTTATGCTGTACGTCAAACACAATGAAAAGTCGGAAACCGATAAAGACAAACTGAAACGACAATACAACACTCTGGATGATagcgaaaaattgatttggatTCAGAAAGCGATAACTGCATACGAAGACGGTGACTTCGAAAAAATCTTAAGCAAGGACGAGTACAGTTTATTCAAAGGCGAACCCAAACAACCGATGAACGCATTtaatttcttcataaaaaaactGTCGACCGAACAGAAAGTCGACTTCAAGACAGCTGTTCAAGCGTACCGCTCTTTAAGTAAAGAAGAGAAGGATGTCTTCATCGAAATGTCGAGAAAGGCAAAAATTCAATACAAGCATGACCTGGCGACCTATCTGTTCTCATTGCCACCAGATGAACAAGCCGCTTACTTGAATAAACTGGAAGCACCGAAACGAACACGAgtcaaaaaagagaaaatcgtCAACCCGAAAAATGACGATGATGTGGACGACGACATCGAGGACGATGAAGAAATTGCATTGCAAACTAGCGTTGATTTCGAAGAATCAACGATTCCTTCTAATCAAATAGAAGTGATTGCCACCCAGGATAGCCCTGATTTCGACGAAGCGGCTGCGGCTGATAATACAGTAGAAGAAATCGACGTTTTCACAATAAAAACGGAATTCGATGCTACAGCCAATAACGATCACCAGACATCTACGTCCAACACTTCTCTGGAAACATCCAAAACCTCAACTAAATCGAAGACATCGGACAAAGCTGCAAAATCGAAAGCATCTGCACCTAAACCAGCTGAACATTCGGAAGCCGATGACTCTTTGccgaataaaagaaattctcTCCAAAACGAATGCGACGAGCAAACACCGCGTAAATCTACCTTATCGAAATCATTATCGCAGGTCACTGATGACGAATCTATAAGCAGCAACGTTTCGGAAAAGAAGAAAGATAAGGCGCACAAGCGGAAACGTAGAGAGGAAGAAAATGAAGACATCATCGATTTTGAgaataagaaaattaaacaAGAAGTTGTTGAGCCGACGAGAGTACCATCGAGGCCCTACTACTACTACCTTCAAAACATGTACACTGGAAAGAGGAAGAAAGCTAAGAAAACTTACATTAAGTTGGACCATGCGGAAAAGAAACGAATCAGGAAAGAACACAAACGTCTTCACAAAGAGTACTTGGCCAAACTAGAAGAATTTTGTTCAACCATCACTTCCAAAAAGGAAATGGAAAGTTTTGCTGATAGAATGCGGCGAGCAGAAGAAATCGAAGCAGAGACGTCCGATCCCGATGaataa
- Protein Sequence
- MASGKRNARLNKSLFKLKQEKGVDVDEVEEDLSDEDDQQWTKDETVKLMASIKTQLKERDTYSYIRRIQLLNWDQVKIGEKSVNECKRRLQFLIKKIRHVRTLGEILSDVDLERVDVKKPKSAYALFCEEMKNGDLDLNGNNFFKEASERFKKLSPARKDFYEKESRRQSLIYKQQCPKGTRRKRTDLTPFMLYVKHNEKSETDKDKLKRQYNTLDDSEKLIWIQKAITAYEDGDFEKILSKDEYSLFKGEPKQPMNAFNFFIKKLSTEQKVDFKTAVQAYRSLSKEEKDVFIEMSRKAKIQYKHDLATYLFSLPPDEQAAYLNKLEAPKRTRVKKEKIVNPKNDDDVDDDIEDDEEIALQTSVDFEESTIPSNQIEVIATQDSPDFDEAAAADNTVEEIDVFTIKTEFDATANNDHQTSTSNTSLETSKTSTKSKTSDKAAKSKASAPKPAEHSEADDSLPNKRNSLQNECDEQTPRKSTLSKSLSQVTDDESISSNVSEKKKDKAHKRKRREEENEDIIDFENKKIKQEVVEPTRVPSRPYYYYLQNMYTGKRKKAKKTYIKLDHAEKKRIRKEHKRLHKEYLAKLEEFCSTITSKKEMESFADRMRRAEEIEAETSDPDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265761; iTF_00246312;
- 90% Identity
- iTF_00246312;
- 80% Identity
- -