Bcop008883.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- bab1
- Assembly
- GCA_014529535.1
- Location
- NW:7701311-7718861[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-13 4.7e-10 38.9 0.0 1 45 345 389 345 389 0.94 2 2 0.31 2.8e+02 1.2 0.8 4 20 495 510 494 510 0.91
Sequence Information
- Coding Sequence
- ATGGGTGGACCTGAAGGACAAACATATTGCCTACGATGGAACAACCACAAATCGAATTTGGTCGAAATATTGGACGTGCTAATTCAAAAAGAATGTTACGTCGACTGTACCATCTATGTGGACGGTGGCGAACAGTTCAAAGCCCATCGAGTGGTACTCGCAGCTAATTCACCATATTTTCAATCGATCCTGCAGGACGTTCCAATGGATCACTGCAGCATTTTAGTTCCTGGCGTGCAGCCATTTGAAATGCGTGCGCTCATCGAATACATGTACACCGGCGAGGTGAATGTCACTCAATCGCAAATACCTCGGATAATGACAATCGCTAAACAGTTAGAGGTCAAAGGACTGTACGACATGACCGATCTGAAAgataaattcgataaaatggACGACACAGAACACTATCCACACAACAATCATAAACATAACGATTTACAGTCATCACCGATCATATCAACGTCAACAAATATAGCGACCGCTCAAAGCAGTAGCTCATCACCGCCATATAACTATAAGCCATATTCGAATCTATTTTCCCCGAGTTCAGTTCCAATGATCAAAAACGATCGTTCACATCCGTGGTCAATGTCGTCACATCTGACGTCCGGCCTCCATCCACCACCGCATTTACAAAACGCAGCTGTCGCAATGCTAAGTTCCGTTTACGAATCCGGTTCGGATATGAATCCGTTGAAAAGGAAAAAACTTCAGTCGATCTCCAGCATGCTCATGTCCAACGATACGCCGATATTGCGAAACGTTTTAGCTCAACCGAACGTAGCCGATTCATCACAGTCTGTGCCATTGGTCGGTCCACCAAGTAACAATGAAAGAAGTGGCAGGCAGAGCACACATTCAAATGGAACGGATCATTCAGATAAGCAGAAACACAAATACGATGACCATCCCCACTCGCCGTACACAGACAAATCTTTCGAAGAAGACAACATGGAAACTCAGAATGAATCACGAATTGCGCCCTACATCCCACAACAAAAGCCCGAATGGAAACGCTACAAACAGTACACAAGGGGTGATATTCTTGCTGCCATAGAATGCGTCAAAAATGGAATGAGTGCGCTACAAGCGTCTCGCAAATACGGTGTGCCATCGCGAACACTCTACgacaaagtcaaaaaattgGGCATCACAACTGGCCGGCCAATGAATCGTACAATGAAGCGAAGTAACAGCAACGGCAGTAGCCCATCGGCACCATTTCCATACGGCCTGAGCGGTTGTGGCACGAGTAGTCCATATTCGGTAAATGACAACCACCAGAACTATTCGCATGGTCACAATCAGTCTCAATCGAATCTGCATAATGATTCCGGCGACAGAGACATTGAATCGTGTGAACGTGACCATCACATTCCACCATCCCATCCAGCCGCAGCTCTGTTAGACGCTACATTTTTACAACAGGCCATGGAACGTGGCGGTGATATTGCCGGTCGTGAAGCTTTACATGCGATGGCTCTCGCAGCGGCTGCACACGCAGCTGTTAACGGCATATCGACGAGTCCGGGTACACACGGTACAGCACGATCGCCGAGTCCAAGCATGTTAATGAAATACATGCGCGTGTCCAGTCCCAATAATCCAAACAATCCGATCAATGTGGAACAGAGGGAACAGCGGGAGCAACGAGAGCAGCACGAGGACCGTGAACTACGCGACAACAATCAACATCGTTCGACACCCGACGACGATGAGGTTGAAGACTTGTCGATAGCGAAAAAGGAGAAAGAAAATAGTGTACCGCAACAGTATGGTGTTATTGTGCCGCCGATGACAAAGGTGACACCGCACCATAATGTCGATTTGATTAAGCGGGAAACAATAGCTGATGACGATCCTCACAATTAG
- Protein Sequence
- MGGPEGQTYCLRWNNHKSNLVEILDVLIQKECYVDCTIYVDGGEQFKAHRVVLAANSPYFQSILQDVPMDHCSILVPGVQPFEMRALIEYMYTGEVNVTQSQIPRIMTIAKQLEVKGLYDMTDLKDKFDKMDDTEHYPHNNHKHNDLQSSPIISTSTNIATAQSSSSSPPYNYKPYSNLFSPSSVPMIKNDRSHPWSMSSHLTSGLHPPPHLQNAAVAMLSSVYESGSDMNPLKRKKLQSISSMLMSNDTPILRNVLAQPNVADSSQSVPLVGPPSNNERSGRQSTHSNGTDHSDKQKHKYDDHPHSPYTDKSFEEDNMETQNESRIAPYIPQQKPEWKRYKQYTRGDILAAIECVKNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTMKRSNSNGSSPSAPFPYGLSGCGTSSPYSVNDNHQNYSHGHNQSQSNLHNDSGDRDIESCERDHHIPPSHPAAALLDATFLQQAMERGGDIAGREALHAMALAAAAHAAVNGISTSPGTHGTARSPSPSMLMKYMRVSSPNNPNNPINVEQREQREQREQHEDRELRDNNQHRSTPDDDEVEDLSIAKKEKENSVPQQYGVIVPPMTKVTPHHNVDLIKRETIADDDPHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265688;
- 90% Identity
- iTF_00246254;
- 80% Identity
- iTF_00245534;