Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:524132-525379[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0048 24 6.1 0.2 16 48 166 198 158 202 0.87

2 5 0.00071 3.5 8.7 0.1 21 51 199 229 197 231 0.94

3 5 0.0019 9.4 7.4 0.2 14 50 248 285 245 289 0.86

4 5 0.008 40 5.4 0.1 21 51 313 343 309 345 0.93

5 5 0.00044 2.2 9.4 0.1 15 51 363 400 359 402 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0048	24	6.1	0.2	16	48	166	198	158	202	0.87
2	5	0.00071	3.5	8.7	0.1	21	51	199	229	197	231	0.94
3	5	0.0019	9.4	7.4	0.2	14	50	248	285	245	289	0.86
4	5	0.008	40	5.4	0.1	21	51	313	343	309	345	0.93
5	5	0.00044	2.2	9.4	0.1	15	51	363	400	359	402	0.85

Sequence Information

Coding Sequence: atggaGGGGCTTAGTATAAAGATAAAGGAAGAAATTGAGATTCAGGAGGATCATTTGGAATGGATAAAGCCAGAAACTTCAGGTGAAGGTTTTAAAATGAAGAAAGCTGTTAGTATAAAGATAGAGgaagaaattaaaattcaagAAGATCAAATGAAAATTGGAATAAAGCAAGAACATATAGGTGAAGGTTTTGACACAGAAATTGAGGAAACATTTTGTAACAATGGAGATAAaggtgattttaattttaacgataataagttattttcaaaagaagatttttttatcctGGATGAAgaacatattaaaaaagaaattgtagAACAAGAAAACCGCGATAATgaagatattaaaaaagaaaaagaagtttTAGATGAATTAGTTGAAGAAAATGTGGAAAAACATTTGAGAAGCTCAcctaatgaaaaattttgttgTAGTTTATGTTGTTTGAAGAGTTTTTCCACAAAAACTGGCTTAAAAAGGCATATTCGATCACGTCACACTGGGGAGAGACCTTATAAATGCATGCACTGTAGCAAAGACTTTTTTcaattatcaattttaaaaagACATATTCGCATTCATACTGGGGAGAAACCTCATAAATGCAAGTACTGTGAAAAAACCTTTTCGCAATCATCACATTTAGCATCACATGTTGATTTTAATCATACTGCGAAAAGACCCCATAAATGCACGAATTGTGAAAAGGCCTTTTTCCGATTAACAGATTTAAAAACACATAGCCGCACTCATACTGGGGAAAGACCCTTTAAATGCAAGTACTGTGAAAAAACTTATTTGCAATCATCACATTTAAAAACACATGTTAATTTTCTTCATACTGCAGAAAGACCCCATAAATGCAAGAATTGTGAAAAGGCCTTTTTCCgattatcagatttaaatacACATAATGGCACACATACTGGGGAAAGACCCTATAAATGCAAGTACTGTGAAAAAACCTATTTGCTATCATCacatttaaaaacacatattaattttaaacatactGCGAAAAGACCCCATAAATGCACGAATTGTGAAAAGGCTTTTTTCCGATTAACAGATTTAAAAACACATAGCCGCAACCATACCGGGGAAAGACCCTTTAAATGCAAGTACTGTGAAAAAACCTATTTGCAATCATCACATTTAAAAACACATCTTAATTCTAAACATACTGGGAAAAAAACCCCACTTAATGCCTTGGAAGATGGAAATCAGGTGTTACAATAA
Protein Sequence: MEGLSIKIKEEIEIQEDHLEWIKPETSGEGFKMKKAVSIKIEEEIKIQEDQMKIGIKQEHIGEGFDTEIEETFCNNGDKGDFNFNDNKLFSKEDFFILDEEHIKKEIVEQENRDNEDIKKEKEVLDELVEENVEKHLRSSPNEKFCCSLCCLKSFSTKTGLKRHIRSRHTGERPYKCMHCSKDFFQLSILKRHIRIHTGEKPHKCKYCEKTFSQSSHLASHVDFNHTAKRPHKCTNCEKAFFRLTDLKTHSRTHTGERPFKCKYCEKTYLQSSHLKTHVNFLHTAERPHKCKNCEKAFFRLSDLNTHNGTHTGERPYKCKYCEKTYLLSSHLKTHINFKHTAKRPHKCTNCEKAFFRLTDLKTHSRNHTGERPFKCKYCEKTYLQSSHLKTHLNSKHTGKKTPLNALEDGNQVLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00244834;
90% Identity: iTF_00244834;
80% Identity: iTF_00244834;