Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:460140-468198[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.8 1.4e+04 -2.8 0.1 35 52 109 126 100 136 0.61

2 14 0.0023 11 7.1 0.1 22 45 152 175 140 184 0.84

3 14 0.65 3.2e+03 -0.7 0.1 22 45 208 231 205 239 0.79

4 14 0.31 1.5e+03 0.3 0.1 23 44 237 258 231 262 0.77

5 14 0.00097 4.8 8.3 0.0 21 52 263 294 259 296 0.89

6 14 0.2 1e+03 0.9 0.0 22 44 292 314 288 321 0.85

7 14 0.039 1.9e+02 3.2 0.2 22 45 320 343 315 351 0.85

8 14 0.54 2.7e+03 -0.5 0.1 18 36 343 361 337 364 0.78

9 14 0.032 1.6e+02 3.4 0.0 20 44 466 490 459 497 0.83

10 14 0.0013 6.6 7.9 0.0 21 52 528 559 516 561 0.86

11 14 0.24 1.2e+03 0.6 0.0 21 46 556 580 553 588 0.85

12 14 0.049 2.4e+02 2.8 0.0 19 44 581 607 573 613 0.86

13 14 0.00018 0.9 10.6 0.0 23 52 614 643 608 645 0.84

14 14 0.39 2e+03 -0.0 0.1 18 30 637 649 632 655 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.8	1.4e+04	-2.8	0.1	35	52	109	126	100	136	0.61
2	14	0.0023	11	7.1	0.1	22	45	152	175	140	184	0.84
3	14	0.65	3.2e+03	-0.7	0.1	22	45	208	231	205	239	0.79
4	14	0.31	1.5e+03	0.3	0.1	23	44	237	258	231	262	0.77
5	14	0.00097	4.8	8.3	0.0	21	52	263	294	259	296	0.89
6	14	0.2	1e+03	0.9	0.0	22	44	292	314	288	321	0.85
7	14	0.039	1.9e+02	3.2	0.2	22	45	320	343	315	351	0.85
8	14	0.54	2.7e+03	-0.5	0.1	18	36	343	361	337	364	0.78
9	14	0.032	1.6e+02	3.4	0.0	20	44	466	490	459	497	0.83
10	14	0.0013	6.6	7.9	0.0	21	52	528	559	516	561	0.86
11	14	0.24	1.2e+03	0.6	0.0	21	46	556	580	553	588	0.85
12	14	0.049	2.4e+02	2.8	0.0	19	44	581	607	573	613	0.86
13	14	0.00018	0.9	10.6	0.0	23	52	614	643	608	645	0.84
14	14	0.39	2e+03	-0.0	0.1	18	30	637	649	632	655	0.79

Sequence Information

Coding Sequence: atggaagaaataaaaacagaaatagTGAAGCTTGAAATTAAAACAGAGCTTTTTGAAGAAGATGAAATGGAAGTACTAATAAAGCAAGAAATTCATGATGAAGATAAAATGGAGAACAAAGAAATATTCATGATTAAGATTAAAGAAGAAATACCAATTAAACAAGAATTTTGCGATCCAgatgaatttaaaattatgactgaagaaataataatcaaaaaagAATGTCCATCATGCAAAAAGTCATTTAATAATGCTATCGGATTGGGTAAGCACATTTGTGCTCCCAACGGCTTTATTTGTGCTGAATGTGGaaaatcttttacaaaaaaacgcgGTTTAAGaatacatattttaatacattCTGGAACAAAACCCCATTCTTGCTCTCATTGCGAGAAAGCATTTTACAGAGCCTGTGACTTAAAAACACATTTCCACACACATTCCGAAAATAGCCCCCATTCTTGTACAGTGTGCGGAAAATCAGTTTATAACGCAACCAATTTAAAAAGGCATATGCAGTCACATTCAGACTTGAGGCCTTACAGTTGCACACTTTGTGAAAAATCGTTTGCAGAAAAGGGCACTTTGACGCAGCACCTTTTAACGCATTCTGTAgaaaaaccctatttttgcgCACATTGTGACAAATCATTTCCTAGAAAAGTATATTTAAGAAGACATATGTTTACTCATATGGAAGTAAAACCTCATGGTTGTCCGGTTTGTGAAAAATCATTTTCCAGAGTGCTTGATCTAACTAAACATATCATGATACATACAGGAGAAAAGCCGTTTACTTGTAATGAGTGTGGGAAATCTTTTAATCAAGAAGTCAACTTGAAACGACACGCGTTTGTACATTCCATGGAAAAACCTCATTTGTGCCCCCACTGTGGAAAATCGTTTAGCCAAGTGGATTATTTGAAAACGCATGTTTTAACTCATACTGGGGAGAAAAATCATTCTTGTTCCACGTGCGGAAAATTGTTTCTGACTAGGAGAAATCTGAGACAGCACATACGCACTCATTCCGATGTGAAACATACTTGTTTAATATGTAACAAATCTTTTAAGCAagttATTCAATTTGTAAATCTGGATATATTGCCAATTTTGAAGATCACTATAGCCATGGaagataataaaattgaaatagtAGATCATGAAATAAAGAAGGAAGATGATAAAGATTATCAAAgtaatattgaaattaaaagCGAAGAAATATGTattgataaaattaaagaagaaaaCATAATACCAATCAGACATCAAGTCTGTGTTTCCGATGAATTTAAAATTGAGACTGAAGAAATTTCTAGTGATGACGTAATCAAAGAAGAGCAGAGAGATGAAAGAGTGGAATATTGTAATGAAAAAAGTGTGATAGATAGAGAAAAACCATTTACATGCTCACTTTGTGGAAAATCTTTTAAACGGAAGGGTGATTTCAAAAGGCACAGTTTTTTACATTCAGAAATAAAATctcctaaatataaaaaatatatttgctcgATTTGTGGAAAATCTCTGGGTGATAAAAATGGTATGGAGAACCACATGCAGATACATACAGGAGAAAAGCCGTTTATATGCTCATTCTGTGGAAAATCATTTAGACAAAATGCTGATTTGAAACagcatatttttttgcatacaggagaaaaaccatacGTCTGTTCAAATTGTGGAAAATCTTTTACACATAAGAAAAGTTTGAAAAGACATATTCTATCACATACCGAAAATCCAAGTTTTTCTTGCCCTCAATGTATGAAACTGTTTTATATATCAGATGATTTAAGAGGCCATATGATCACTCTCTCACAAGCAAGACCATTTACTTGCCCAATTTGTACAAAATCTTTTAAGCAAGTGGGTGACTTAAATAAACATACTTCAATACACTCTAAAGAAAAGCCCCATTCCTGCCCCCAATGTGGAAAGTCTTTTGCCCTTGCGTGCGATTTCAAAAACCATAAGTTAAtccacaataaaataaaaactcattCTTGCCCCAAGCGTGAACAGTTATTTTTAAcagcaaaatatttaaagaggCATATGCGTTCACATTCTGGCATAAAGTATTGTTTGCATTGTGAAAAATCTTATTCGACAAAAGACAATTTAAAGAAGCATAGCCTGATGCACAGCGAAGTGACCTTGATGAATTGTTAA
Protein Sequence: MEEIKTEIVKLEIKTELFEEDEMEVLIKQEIHDEDKMENKEIFMIKIKEEIPIKQEFCDPDEFKIMTEEIIIKKECPSCKKSFNNAIGLGKHICAPNGFICAECGKSFTKKRGLRIHILIHSGTKPHSCSHCEKAFYRACDLKTHFHTHSENSPHSCTVCGKSVYNATNLKRHMQSHSDLRPYSCTLCEKSFAEKGTLTQHLLTHSVEKPYFCAHCDKSFPRKVYLRRHMFTHMEVKPHGCPVCEKSFSRVLDLTKHIMIHTGEKPFTCNECGKSFNQEVNLKRHAFVHSMEKPHLCPHCGKSFSQVDYLKTHVLTHTGEKNHSCSTCGKLFLTRRNLRQHIRTHSDVKHTCLICNKSFKQVIQFVNLDILPILKITIAMEDNKIEIVDHEIKKEDDKDYQSNIEIKSEEICIDKIKEENIIPIRHQVCVSDEFKIETEEISSDDVIKEEQRDERVEYCNEKSVIDREKPFTCSLCGKSFKRKGDFKRHSFLHSEIKSPKYKKYICSICGKSLGDKNGMENHMQIHTGEKPFICSFCGKSFRQNADLKQHIFLHTGEKPYVCSNCGKSFTHKKSLKRHILSHTENPSFSCPQCMKLFYISDDLRGHMITLSQARPFTCPICTKSFKQVGDLNKHTSIHSKEKPHSCPQCGKSFALACDFKNHKLIHNKIKTHSCPKREQLFLTAKYLKRHMRSHSGIKYCLHCEKSYSTKDNLKKHSLMHSEVTLMNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00244486;
90% Identity: iTF_00244486;
80% Identity: iTF_00244486;