Bgla017143.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294047.1:53913317-53920446[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.67 3.3e+03 -0.8 0.0 25 35 127 137 118 146 0.69 2 5 0.0091 45 5.2 0.0 22 45 153 176 149 180 0.88 3 5 0.00056 2.8 9.1 0.1 21 46 180 205 176 208 0.91 4 5 4.5e-05 0.23 12.6 0.0 21 52 208 239 205 239 0.89 5 5 0.0015 7.7 7.7 0.0 21 48 236 263 232 267 0.90
Sequence Information
- Coding Sequence
- ATGGATTATAGGGAGGAATATAATGAATCTTTTGAGCCAGTGGTGATAATCAATGATGAGAGTGATGATGAATTTCAGGAGCAACATGATCCTCTGGCCCTGGATGAAGAAGAAACCTACAAATCCCCGGAAAAAACGACAGACGAGCTCATCAAGTCGATAGGACCGGAAGTTTCCATAATTCCGGTCAAGAAAAAACCCCGCCCCGTTATAAAAATTCGACTTTTCGCCAAAGAATATTCGCCTTCTAAAGATGATGTTAAGgtgcAAAGCGAAATCAGACCCGTCTTAAGCAACAGGTCGCCCCTGATAAAAATCAGCGAAGAAGAGGCGAAAGTGGCGGCCGAATTGTATTCGAAAAGAAAGTCTTCCCCGTTAAAACGGTGCCCATTGTGCAAAAAATACTTCCGCCGGATGGAGACACATCTTTTGCAGCACGAGGGTGTCGTCAATACGGAAGAGCTGTTCACGTGCGAGgtGTGTTTCAAGAACTTCAAAGACATGAGCAACCTGCAGATCCACCTGAAGGGGCACACCGCCGAACGGCCGTACGTGTGCACCGTGTGCGACAAATCGTTCACGCAGAGCTGCAATCTGACCAATCACATGAGGATCCATACAGgcGAAAAACCGTTCAAATGCCCCCACTGCGATAAGGCTTTCACACAATCCGGCAACCTTAACAACCACATCCGGTTGCACACGGACGAGAAACCCTTCAAATGTCACTTTTGCAACAAGGCCTTCGTGCAATCTGGCAACCTTAATTCTCATATCAAAAACAATCACAAATTCCAGGAGGCCATGACGGAATCGATGGACCATTTCATGGGACAGCCATCTTGA
- Protein Sequence
- MDYREEYNESFEPVVIINDESDDEFQEQHDPLALDEEETYKSPEKTTDELIKSIGPEVSIIPVKKKPRPVIKIRLFAKEYSPSKDDVKVQSEIRPVLSNRSPLIKISEEEAKVAAELYSKRKSSPLKRCPLCKKYFRRMETHLLQHEGVVNTEELFTCEVCFKNFKDMSNLQIHLKGHTAERPYVCTVCDKSFTQSCNLTNHMRIHTGEKPFKCPHCDKAFTQSGNLNNHIRLHTDEKPFKCHFCNKAFVQSGNLNSHIKNNHKFQEAMTESMDHFMGQPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00244798;
- 90% Identity
- iTF_00244798;
- 80% Identity
- iTF_00244798;