Bgla011990.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294046.1:4136438-4138033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00068 0.039 15.3 6.4 1 23 82 104 82 104 0.98 2 16 0.0017 0.097 14.1 8.8 1 23 111 133 111 133 0.97 3 16 6.5e-06 0.00037 21.7 2.5 2 23 139 160 138 160 0.97 4 16 7.8e-05 0.0044 18.3 1.8 3 23 168 188 166 188 0.97 5 16 4.2e-06 0.00024 22.3 5.6 1 23 197 219 197 219 0.98 6 16 0.00055 0.031 15.6 2.2 1 23 225 247 225 247 0.98 7 16 0.004 0.23 12.9 0.1 1 23 253 275 253 275 0.98 8 16 0.00014 0.008 17.5 4.8 1 23 281 303 281 303 0.99 9 16 6e-08 3.4e-06 28.1 2.3 1 23 309 331 309 331 0.98 10 16 0.025 1.4 10.4 0.1 5 23 340 358 337 358 0.93 11 16 2.9e-05 0.0016 19.7 6.7 1 23 364 386 364 386 0.97 12 16 0.00017 0.0095 17.3 1.2 1 23 392 414 392 414 0.99 13 16 9.3e-06 0.00053 21.2 1.4 1 23 420 442 420 442 0.98 14 16 6.3e-06 0.00036 21.7 3.4 1 23 448 470 448 470 0.98 15 16 1.4e-05 0.00079 20.7 0.8 3 23 478 498 476 498 0.98 16 16 5.9e-05 0.0033 18.7 1.7 1 23 504 527 504 527 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATGTGAAAATTGAAATAGAGGAACACGAAATCAAATATTCTGAAGAGCTTGAAAACAAAGTTAAGAGTAGCCTGAAATACGTAAAAGAAGAAATTTTGGATGAAATAGAAATTGAAAATGAACATCTCGATATCCCCTCATCAGAAAAAAAGAAGCATACTAAAATTAAGAAGATTACAGGAGATATAACAGATTTTAATGGCAACATTTTAAAAGAACGCATAgacgataaaaaatatatttgttccTATTGTTTGAAGAAGTTTAACCATAAAGGTTGCTTATCAAATCATAtcaaaacacacataaaaatcgAGAAACCGCATAATTGTCCTCATTGCGTGAAAAAATTTCACTCTACAAGTAATTTAAAGAACCATTTGAAAAAGCATTCGAAAAAGCCAGATGTATGTTCCTATTGTCAAAAGGAGTTTTGTTCTAAACAAGCTTTAACCAGTCATATTCGGACACATACTCTGGAAAAACCATTCGGTTGTAAAAATTGTGGAAAATTGTTTTCCAGAAAAGACTATTTGAAAAGCCATAGCTTAACTCACGAGGGAGAAAGGAGAGTTAAGGCTCACAAATGTCCGAAATGCAAGaaaaagttttctaaaaaatcttatttaactatacatattCAAAGACACAGTGGggtaaaaccttttaaatgttCTCAATGTCAAAAGAAGTTTTTCATCAAAAGTGAGTTGGCTCAGCATAACAGAATACACACTGGACAAACTTTATATGAATGTGCCTATTgtcagaaaataattaaatataaatgggTATTAATTGAGCATATACGGATTCATACGGGTTTAAAACCTTATAAATGTACACATTGTTTGAAAGAATTCAGATTAAAAAACACCTTAACTCAACATATTCGATCGCATACCAAAGAAAAACCTTACGAGTGTCCATACTGCCAGAAAAGGTTTTCAAGAAGTAGCAATCTGAACCAACATAAGAAAATTCATGGAGAAAAATcgaatatttgtatttattgtaACAAACAGTTTGCACTGTCAAGAGCTTTAGCCAGGCATGTTCAAATACACTTGAGAGTTGTATCTCACCATTGTTCGTATTGTCACAAGAAGTTTGTTTCTGCAAGTAATTTACTTGAGCATATAAAAACCCATACAGGGGATGCAAAATATAAATGTCCATACTGCCAACAACAGTATAATGAAAAGAGAAGACTCGTCGTTCATATTCGGACTCATACCAAAGAGCTACCATTTGAATGCTCCATATGCGACAGAAAATTTTCTTACAAGCCCTACTTGAATCAGCATTTGAAGTTACATTCTGGAGTCAAGAGTTTTATCTGCACTTTTTGCGAGAAACGGTTTTCAAGATCGGAACATTTAAGATCGCACGTTCGAATCCACACAAAGGAAAAGCCATTTGGTTGTACTTTTTGTGGAAAAAAGTTCGCGAATAAGGAATATGTAAAAATTCATATTCGAACTCACACAGCTGAGAAACCATTTAAATGTAGTTTTTGTGAGAAGCAGTTCAGTCAAAGTACTCCCTTAAGTCAACATATAAGGAAGGTTCATAAGAACTCCGTTTGA
- Protein Sequence
- MEDVKIEIEEHEIKYSEELENKVKSSLKYVKEEILDEIEIENEHLDIPSSEKKKHTKIKKITGDITDFNGNILKERIDDKKYICSYCLKKFNHKGCLSNHIKTHIKIEKPHNCPHCVKKFHSTSNLKNHLKKHSKKPDVCSYCQKEFCSKQALTSHIRTHTLEKPFGCKNCGKLFSRKDYLKSHSLTHEGERRVKAHKCPKCKKKFSKKSYLTIHIQRHSGVKPFKCSQCQKKFFIKSELAQHNRIHTGQTLYECAYCQKIIKYKWVLIEHIRIHTGLKPYKCTHCLKEFRLKNTLTQHIRSHTKEKPYECPYCQKRFSRSSNLNQHKKIHGEKSNICIYCNKQFALSRALARHVQIHLRVVSHHCSYCHKKFVSASNLLEHIKTHTGDAKYKCPYCQQQYNEKRRLVVHIRTHTKELPFECSICDRKFSYKPYLNQHLKLHSGVKSFICTFCEKRFSRSEHLRSHVRIHTKEKPFGCTFCGKKFANKEYVKIHIRTHTAEKPFKCSFCEKQFSQSTPLSQHIRKVHKNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00244437;
- 90% Identity
- iTF_00244437;
- 80% Identity
- iTF_00244437;