Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:521229-523109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.062 3.5 9.2 6.0 6 23 152 170 146 170 0.83

2 17 1e-06 5.9e-05 24.2 2.7 1 23 176 199 176 199 0.92

3 17 0.00028 0.016 16.6 7.3 1 23 205 227 205 227 0.98

4 17 3.1e-05 0.0018 19.6 3.9 1 23 233 256 233 256 0.98

5 17 0.00015 0.0085 17.4 4.9 1 23 262 284 262 284 0.98

6 17 4.5e-05 0.0026 19.0 4.9 1 22 290 311 290 313 0.90

7 17 8.4e-05 0.0048 18.2 4.5 1 23 319 341 319 341 0.98

8 17 0.0023 0.13 13.7 4.8 1 23 347 370 347 370 0.94

9 17 8.3e-05 0.0047 18.2 4.8 1 23 376 398 376 398 0.98

10 17 0.00012 0.0071 17.7 3.9 1 23 404 427 404 427 0.98

11 17 3.9e-05 0.0022 19.3 4.4 1 23 433 455 433 455 0.98

12 17 4.2e-07 2.4e-05 25.5 6.3 1 23 461 483 461 483 0.99

13 17 1.7e-07 9.4e-06 26.7 6.7 1 23 489 511 489 511 0.99

14 17 1.4e-07 7.7e-06 27.0 1.1 1 23 517 539 517 539 0.98

15 17 0.0014 0.078 14.4 10.7 1 23 545 567 545 567 0.98

16 17 3.8e-07 2.2e-05 25.6 0.9 1 23 573 595 573 595 0.99

17 17 3.9e-06 0.00022 22.4 2.1 1 23 601 623 601 623 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.062	3.5	9.2	6.0	6	23	152	170	146	170	0.83
2	17	1e-06	5.9e-05	24.2	2.7	1	23	176	199	176	199	0.92
3	17	0.00028	0.016	16.6	7.3	1	23	205	227	205	227	0.98
4	17	3.1e-05	0.0018	19.6	3.9	1	23	233	256	233	256	0.98
5	17	0.00015	0.0085	17.4	4.9	1	23	262	284	262	284	0.98
6	17	4.5e-05	0.0026	19.0	4.9	1	22	290	311	290	313	0.90
7	17	8.4e-05	0.0048	18.2	4.5	1	23	319	341	319	341	0.98
8	17	0.0023	0.13	13.7	4.8	1	23	347	370	347	370	0.94
9	17	8.3e-05	0.0047	18.2	4.8	1	23	376	398	376	398	0.98
10	17	0.00012	0.0071	17.7	3.9	1	23	404	427	404	427	0.98
11	17	3.9e-05	0.0022	19.3	4.4	1	23	433	455	433	455	0.98
12	17	4.2e-07	2.4e-05	25.5	6.3	1	23	461	483	461	483	0.99
13	17	1.7e-07	9.4e-06	26.7	6.7	1	23	489	511	489	511	0.99
14	17	1.4e-07	7.7e-06	27.0	1.1	1	23	517	539	517	539	0.98
15	17	0.0014	0.078	14.4	10.7	1	23	545	567	545	567	0.98
16	17	3.8e-07	2.2e-05	25.6	0.9	1	23	573	595	573	595	0.99
17	17	3.9e-06	0.00022	22.4	2.1	1	23	601	623	601	623	0.98

Sequence Information

Coding Sequence: atggaAGGGCTTAGTATAAAGATAAAGGAAGAAATTGAGATTCAGGAGGATCATTTGGAATGGATAAAGCCAGAACCTTCAGGTGAAGGTTTTAAAATGAAGAAAGCTGTTGATATAAAGATAGAGgaagaaattaaaattcaagAAGATCAAATGAAAATTGGAATAAAGCAAGAACATATAGGTGAAGGTTTTGAAACAGAAATTGAGGAAACATTTTGTAACAATGGAGATAAaggtgattttaattttaacgataataagatattttcaaaagaaGATATTTTTATCCTGAATGAAgaacatattaaaaaagaaattgtagGGCAAGAACACAGTGATAATGAAGATATTAGAAAAGGAAAAGAACAAGTTTTAGATAAATTAGTCGAAGAAAATGTGGAAAAACATTTAAGAAGCTCAcctaatgaaaatttttgttgtAGCTTATGTTGTATGAAAAGTTTTTCCACAAAAACTGGCTTAAAAAGGCATATTCGATCATATCACACTGGGGAGAGATCTTATAAATGCAAGTACTGTGAAAAAACCTTTTCGCAATCATCACATTTAGCAGCACATATTGATTTTAATCATACTGCAAAAAGACCCCATAAATGCACGAATTGTGAAAAGGCCTTCTTCCGATTATCACATTTAAAAACACATAGCCGCACTCATACTGGGGAAAGACCTTTTAAATGCAAGTActgtgaaaaaacttttttgcaatcATCACATTTAAAATCACATATTAATTCTGGTCATACTGGGAAAAAAAACCATAAATGCACACATTGtgaaaaggatttttttgaattatcacTTTTAAAAAGACATATTCGCATTCATACTGGGGAGAGACCTCATAAATGCAAGTACTGTGAAAAAACCTTTTCGCAATCATCACATTTAGCATCACATGTTGATTTTAATCATACTGCGAAAAGACCCCATAAATGCACGAATTGTGAAAAGGCCTTTTTCCGATTATCAGATTTAAAAACACATAGCCGCACTCATACTGGGGAAAGACCCTTTAAATGTAAGTACTGTGAAAAAACTTATTTGCAATCATCACATTTAAAAACACATGTTAATTTTCTTCATACTGCAGAAAGACCCCATAAATGCAAGAATTGTGAAAAGGCCTTTTTCCGATTATCAGATTTAAAAACACATAGCCGCACTCATACTGGGGAAAGACCCTTTAAATGTAAGTACTGTGAAAAAACTTATTTGCAATCATCacatttaaaaacacatattaaTTCTGGTCATACTGGGAAAAAAACCCATAAATGCACACATTGTGAAAAGGCTTTTTTTGAATTATCACTTTTAAAAAGACATATCCGCATTCATACTGGGAAAAATACCTATAAATGCAAGTACTGTGAAAAGACCTTTTCGCAATctacaaatttaaaaagacaTATTTGCTCACATACTGGGGAAAGACCCTATAAATGCACGCATTGTGACAAGGCCTTTTCAAATTCATCTCATTTAAAAAGACATATTTTCACGCATTTTGAAGATAGACCACACAGATGCGGGTACTGTGGTAGAGCCTTTTCAgatttatcaaatttaaaaggacatattcgcacgcatactATGGAGAAGCCCCATAAATGCACGCATTGCGAGaaagatttttcaaaattgtgtCATTTAAAAATCCATATTCGTACTCATACCGGGGAAAGACCCTATAAATGCACGCAGTGTGAGAAATCCTTTTCTGATCCTTCAGGTTTAAGAATACATAGTCGCACACATACTGGGGAGAGACCCTATAAATGCACGCACTGTGAAAAATCATTTGCAGGAGGTTCAAACTTAAAAAGGCATATTTCATCACACACAAGCAATTAA
Protein Sequence: MEGLSIKIKEEIEIQEDHLEWIKPEPSGEGFKMKKAVDIKIEEEIKIQEDQMKIGIKQEHIGEGFETEIEETFCNNGDKGDFNFNDNKIFSKEDIFILNEEHIKKEIVGQEHSDNEDIRKGKEQVLDKLVEENVEKHLRSSPNENFCCSLCCMKSFSTKTGLKRHIRSYHTGERSYKCKYCEKTFSQSSHLAAHIDFNHTAKRPHKCTNCEKAFFRLSHLKTHSRTHTGERPFKCKYCEKTFLQSSHLKSHINSGHTGKKNHKCTHCEKDFFELSLLKRHIRIHTGERPHKCKYCEKTFSQSSHLASHVDFNHTAKRPHKCTNCEKAFFRLSDLKTHSRTHTGERPFKCKYCEKTYLQSSHLKTHVNFLHTAERPHKCKNCEKAFFRLSDLKTHSRTHTGERPFKCKYCEKTYLQSSHLKTHINSGHTGKKTHKCTHCEKAFFELSLLKRHIRIHTGKNTYKCKYCEKTFSQSTNLKRHICSHTGERPYKCTHCDKAFSNSSHLKRHIFTHFEDRPHRCGYCGRAFSDLSNLKGHIRTHTMEKPHKCTHCEKDFSKLCHLKIHIRTHTGERPYKCTQCEKSFSDPSGLRIHSRTHTGERPYKCTHCEKSFAGGSNLKRHISSHTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00244441;
90% Identity: iTF_00244441;
80% Identity: iTF_00244441;