Bgla028723.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:2404377-2409888[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00013 0.0075 17.6 1.6 1 23 139 161 139 161 0.99
2 25 9.1e-08 5.1e-06 27.5 3.6 1 23 167 189 167 189 0.99
3 25 1.5e-06 8.3e-05 23.7 1.6 1 23 195 217 195 217 0.99
4 25 6.2e-06 0.00035 21.8 1.8 1 23 223 245 223 245 0.98
5 25 2.9e-07 1.6e-05 26.0 0.9 1 23 251 273 251 273 0.98
6 25 0.00042 0.024 16.0 1.4 1 23 279 301 279 301 0.98
7 25 2.3e-06 0.00013 23.1 2.7 1 23 309 331 309 331 0.98
8 25 0.00017 0.0096 17.2 7.1 1 23 343 365 343 365 0.98
9 25 3e-06 0.00017 22.8 1.8 1 23 371 393 371 393 0.99
10 25 5.8e-06 0.00033 21.9 0.7 1 23 399 421 399 421 0.97
11 25 1.8e-07 1e-05 26.6 1.6 1 23 427 449 427 449 0.98
12 25 1.7 95 4.7 3.2 1 13 455 467 455 469 0.88
13 25 0.00012 0.0069 17.7 2.5 1 23 587 609 587 609 0.99
14 25 7.6e-05 0.0043 18.3 4.3 1 23 615 637 615 637 0.97
15 25 4.3e-07 2.5e-05 25.4 4.8 1 23 643 665 643 665 0.99
16 25 1.5e-06 8.4e-05 23.7 2.6 1 23 671 693 671 693 0.98
17 25 0.021 1.2 10.7 3.5 1 23 699 721 699 721 0.97
18 25 0.001 0.059 14.8 1.3 1 23 727 749 727 749 0.96
19 25 0.0067 0.38 12.2 2.6 1 23 755 777 755 777 0.96
20 25 1.6e-05 0.00089 20.5 4.5 1 23 783 805 783 805 0.98
21 25 1.3e-05 0.00075 20.7 2.2 1 23 811 833 811 833 0.97
22 25 2.8e-06 0.00016 22.8 3.5 1 23 842 864 842 864 0.99
23 25 0.0017 0.094 14.1 5.2 1 23 870 892 870 892 0.97
24 25 2.5e-05 0.0014 19.9 2.2 1 23 898 920 898 920 0.98
25 25 1.7e-05 0.00097 20.4 2.7 2 23 926 947 925 947 0.97

Sequence Information

Coding Sequence
atgcagGACAACAGTATTGATGATAAAAGCTCACTAAAAATTGATGAGTTAGAAGTTAATGATAATCTCAGaccacaaaatttaataaatctacGAGGAAACGAAgacgaaattttatttaaaaacgaaatgCCGATAAAGTTGGAGAAAGAATACGAAGACATCAAAATTGAGACTGTTGAACAGGATGTTGAATATCATATTAAAGATGAAGAAATGGATTTTGATATTAAACCAGAACTTATAGatatactaaattttaatacatttgtGGGCATAAATCTTGATATAAGAGAACAAGATATCAAAtctgaaaatgtaaaaatggaaaatttaattGATAACGAGCTTCACGACTCTTCACATGATTCCTTTTACAATAAAATGCATCTTCCTAACACTGATAAGAAACCATTTCGATGCTCTTATTGTAAAAAGGAGTTCGCAGAAAAAGCACATTTAATTCCACATATTCGTACACATACTTTAGAAAAACCATTTGAGTGCTCCCACTGTGATAAGAAATTCGCAACAAAATCCAATTTAACCGCACATACTCGTACACATACATTTGAGAAGCCATTTGAATGCTCCTACTGTAACAAGAAATTTACAAGAAGAGGTTATTTAGGCGTACATATTCGTACACATACAGATGGGAAACTATTTGAGTGCTCCTATTGCAATAAGAAATTGATAACAAATTCAAGTTTAACCCAACATATTCGTAGACATACGGGCGAGAAGCCATTTGAGTGCTCCTATTGCGATAAGAAATTTCCAACAAATTCTTCTTTAAGAATCCATATGGTTACTCATACAACTGAGAAGCCATTTGTATGCGCCCATTGCAGTAATAAATTCCCAAGCAAATCTCGTTTAGTCGTGCATATTCGTACACATATGTGTACAACCGAAAAGTCATTTGAGTGTTCCTCTTGTAATAAGAAATTCACGACAAATTCTTCTTTAAAAAGACATGTTCTTACACATACAGCTGCAGTTTCTCAGCTATCTGAGAAGCTGTTTAAATGTTCCTATTGCAATaagaaattttcaacaaattcttcTTTAAAATGCCATATTCGTTATCATACAGCTGATAAGCAATTTGAATGCTCCTACTGCAATAAGAAATTCATAAGCAAATATCGTTTAATCGTTCATATTCGTACACATACAGGCGAGAAGCCATTTGAATGCCCCTATTGCGATAAGAAATTCATAGCAAATTCTTCTTTAAAAAGACATGTTTCTAATCATACAGCTGAAAAGCCATTTGAGTGCTCCTATTGCAATAAGAAATTTCCAACAAATTCTTCTTTAAAATCCCATATTCGTATACATACAGCTGTTAAGCCATTTGAATGCTTCTATTGTAATAAGAAATTCAACTACAGTACTGATGATAAAAACTCACTAAAAACTGATGAATTAAAAGTTAATGATTTTAACCCTAGaccacaaaatttaataaatctacAAGGAAACGAAgaggaaaatattttatttaatattgaaaTGGCGATAAAGTTagagaaagaaataaaaattgagaCTGTTGAAAATGATGTTgaatatcaaattaaaaatgaagaaatGGATTTTGATATTAAACCAGACCTTAtggatataaaaatttttaatacatttgaAGACATGAATCTTGAAATGAGAGAACAAGACATCAAATCTGATAATGTAAAAACGGAACATATAATTGATAACGAGCCTCTTCCTAATACTGATAAGAAACCATTTCGATGCTCCTATTGTAAAAAGGACTTAGCAAGCAAAGCTCATTTAACTGAACATGTTCGTACACATACTTTAGATAAACCATTTGAGTGCTCCTGCTGTGATAagaaattcgcaaaaaaatccaatttaacCGCACATACCCGTACACATAAAGATGTGAGGCCATTTGAATGTTCCTACTGTAACAAGAAATTTTCAAGAAATCATAGTCTACGAGTTCATATTCGTACACATACAAATGAAAAACCATTTGAATGTTCATATTGTTATAAgaaatttacaacaaaatcAAGCTTAACCGAACATATTCTTACACATACAGGCGAAAAGTCATTTAAATGCACCTATTGTATTAAGACGTTCATAAGAAAACGATATTTACTTGAACATAATTTTACACATATGGGTGAAAACCCGTTTGAGTGCTCCAATTGTAATATGACATTCCCAAGGAAACGAGATTTACTTGAACATAATTTTACACatacaggagaaaaaccatttGAGTGTTCCTATTGTAATAAGACATTCCTAAGAAAACGAGATTTACTTGAACATAATTTTACACATACAGGTGAAAAACCATTTGAGTGCTCCTATTGTAACAAAAACTTCACAAGAAAATCACATTTAGTTAGTCATAATCTTACACATACATATGAGAAACGATTTGAATGTTcctattgtaataaaaaattcgCAAGAAAGCCTGATTTAAAAAAGCATACTTTTATACACACAGATGATCATCTCGAGAAGCCTTTTAAATGCTCCCATTGCGATAAGCAGTTTGCAAAAAATTCTTCGTTAAACACCCACATTCTTACACATACAGAAGATAAGCCATTTGAATGCTCCAATTGCGATAAAAAATTTgcaacaaaacattatttgtaCCAGCATAGTTTTACGCACAGAGATGAGAAGGAATTTGAATGTTCCTACTGTAGTAAGAAATTTGCAAGAAAATTTCGTTTAACAGAACATATTCGTATACATACCGATGAAAGGCTTGAATGCTCCTATTGTAGTaagaaatatacaaaaaaatggtCTTTAACAAAACATCTTCGTACACATACAGAAGCCATTTGA
Protein Sequence
MQDNSIDDKSSLKIDELEVNDNLRPQNLINLRGNEDEILFKNEMPIKLEKEYEDIKIETVEQDVEYHIKDEEMDFDIKPELIDILNFNTFVGINLDIREQDIKSENVKMENLIDNELHDSSHDSFYNKMHLPNTDKKPFRCSYCKKEFAEKAHLIPHIRTHTLEKPFECSHCDKKFATKSNLTAHTRTHTFEKPFECSYCNKKFTRRGYLGVHIRTHTDGKLFECSYCNKKLITNSSLTQHIRRHTGEKPFECSYCDKKFPTNSSLRIHMVTHTTEKPFVCAHCSNKFPSKSRLVVHIRTHMCTTEKSFECSSCNKKFTTNSSLKRHVLTHTAAVSQLSEKLFKCSYCNKKFSTNSSLKCHIRYHTADKQFECSYCNKKFISKYRLIVHIRTHTGEKPFECPYCDKKFIANSSLKRHVSNHTAEKPFECSYCNKKFPTNSSLKSHIRIHTAVKPFECFYCNKKFNYSTDDKNSLKTDELKVNDFNPRPQNLINLQGNEEENILFNIEMAIKLEKEIKIETVENDVEYQIKNEEMDFDIKPDLMDIKIFNTFEDMNLEMREQDIKSDNVKTEHIIDNEPLPNTDKKPFRCSYCKKDLASKAHLTEHVRTHTLDKPFECSCCDKKFAKKSNLTAHTRTHKDVRPFECSYCNKKFSRNHSLRVHIRTHTNEKPFECSYCYKKFTTKSSLTEHILTHTGEKSFKCTYCIKTFIRKRYLLEHNFTHMGENPFECSNCNMTFPRKRDLLEHNFTHTGEKPFECSYCNKTFLRKRDLLEHNFTHTGEKPFECSYCNKNFTRKSHLVSHNLTHTYEKRFECSYCNKKFARKPDLKKHTFIHTDDHLEKPFKCSHCDKQFAKNSSLNTHILTHTEDKPFECSNCDKKFATKHYLYQHSFTHRDEKEFECSYCSKKFARKFRLTEHIRIHTDERLECSYCSKKYTKKWSLTKHLRTHTEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00244454;
90% Identity
iTF_00244454;
80% Identity
iTF_00244454;