Bris025063.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- Zfa
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:33334034-33336267[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0059 77 4.6 0.5 27 52 79 104 67 106 0.91 2 10 0.17 2.3e+03 -0.1 0.0 24 45 104 125 103 130 0.84 3 10 0.018 2.4e+02 3.1 0.1 22 49 131 162 125 165 0.76 4 10 6.7e-05 0.87 10.8 0.0 21 46 162 187 159 191 0.92 5 10 0.0062 81 4.5 0.1 22 45 191 214 187 217 0.85 6 10 0.00022 2.8 9.2 0.1 21 46 218 243 214 246 0.91 7 10 0.0086 1.1e+02 4.1 0.0 22 46 247 271 244 277 0.85 8 10 0.00032 4.2 8.7 0.0 21 46 274 299 270 303 0.91 9 10 0.006 79 4.6 0.1 26 48 307 329 298 335 0.85 10 10 0.019 2.4e+02 3.0 0.2 25 44 362 381 353 388 0.84
Sequence Information
- Coding Sequence
- ATGCCAAACTCATCAACACTGAACATACCATACACCGAATCTGTGTGCGAACAAATGCTTACGGAGGATACCAAACACGTGCTTACTGAAGATGGGGAACAAGGGTGGGTGTTCACAGTTGGCTATGACAGCAACAAAGGTAATCCAAGCTTGAAAAAGTCAGTGAAAATGGAGAGAAATTCTAGAAACAGTTTCCACCCAGAAGAAGTTATGCAGTTTCATCCCCAATTCCCCTGTAGCGTCTGTTCAGTGATATGCCACGAAGAACTCGAGCTGCACCGTCACATGCAGAATCACATGTTTATTAAACCCTACAAATGCAGCAAGTGCATAGCAGCATTTCCGTCTTCAAAAATGCTCAACAATCATATTATAAAACACCACCCAGAAGAACAGCCACACACTCGCCAGTTCGCCTGTAACTTCTGTGAAAGATCGTTCACTCAAAAAAGCAATTTAAAAGCTCACGTTAAAATTCACACGGGAGAAAAACCGTTCTCTTGTTCGCTATGCTCGAGAAAGTTCACTCAGTCCAGCAACCTTAAAGAACACTTGAAGATTCATTCGGGAGAACGCGCACACCAGTGTACGCTGTGTCCGAGAGCGTTTACCCAATCGAGCAACCTTAAGGAACATTTCAAAACGCACACGGGAGAAAAACCGTTCTCCTGTTCCTTGTGTTCTAGAAGGTTCACCCAATCGAGCAATCTCAAAGAACACATCAAGATTCATACCGGAGAGAAAAATCATACGTGCTCTTTATGCCCCAGGGCTTTCACGCAACTGAGCAACCTAAAGGAGCACTTCAAAACGCACACAGGAGAAAAACCATTCTCGTGTTCCCTGTGTCCTAGGAAGTTTACCCAATCTAGCAATCTCAAAGAACACATTAAAATTCACTCGAATCAACTTGAACATGTCTGCGCGATTTGCGATAAGAGTTTCGTTCAGCTCAGCAATCTGAAATCACACATAAATGTTGTTCATCGCGGACACTCGGCCGTAACCGGGGCAGTCAGTTGCGAATCTCCGGTCAAGTCAGAGTCGTTCCCAGAACACGATTGTTCAATGAAGAGTAAGAATGAAGCATGTGCAGTGTGTAAACGAGCATTTTTACGGTCGGTAAATCTCAAAAAACATATCGCAAGCACAGATTGTAAACATATTGATGCGTAG
- Protein Sequence
- MPNSSTLNIPYTESVCEQMLTEDTKHVLTEDGEQGWVFTVGYDSNKGNPSLKKSVKMERNSRNSFHPEEVMQFHPQFPCSVCSVICHEELELHRHMQNHMFIKPYKCSKCIAAFPSSKMLNNHIIKHHPEEQPHTRQFACNFCERSFTQKSNLKAHVKIHTGEKPFSCSLCSRKFTQSSNLKEHLKIHSGERAHQCTLCPRAFTQSSNLKEHFKTHTGEKPFSCSLCSRRFTQSSNLKEHIKIHTGEKNHTCSLCPRAFTQLSNLKEHFKTHTGEKPFSCSLCPRKFTQSSNLKEHIKIHSNQLEHVCAICDKSFVQLSNLKSHINVVHRGHSAVTGAVSCESPVKSESFPEHDCSMKSKNEACAVCKRAFLRSVNLKKHIASTDCKHIDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243498; iTF_00242464; iTF_00242816;
- 90% Identity
- iTF_00242816;
- 80% Identity
- iTF_00243498;