Basic Information

Insect: Brachyptera risi
Gene Symbol: Rreb1
Assembly: GCA_964007535.1
Location: OZ023337.1:31909444-31919302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 8e-05 0.0071 17.8 0.9 1 23 148 170 148 170 0.98

2 16 4.2e-05 0.0038 18.7 0.3 1 23 186 208 186 208 0.98

3 16 8.5e-05 0.0075 17.7 2.1 1 23 214 236 214 236 0.99

4 16 2.8 2.5e+02 3.5 0.1 1 23 334 358 334 358 0.87

5 16 7.1 6.3e+02 2.3 3.6 2 23 364 386 363 387 0.93

6 16 0.41 37 6.1 0.9 1 17 437 453 437 457 0.77

7 16 0.14 13 7.6 0.1 1 23 602 624 602 624 0.96

8 16 0.038 3.4 9.4 0.2 1 23 631 653 631 653 0.98

9 16 0.0015 0.14 13.8 3.1 1 23 659 682 659 682 0.97

10 16 0.0039 0.34 12.5 3.3 1 23 1086 1109 1086 1109 0.95

11 16 0.00045 0.04 15.5 1.3 2 23 1412 1433 1411 1433 0.97

12 16 0.25 22 6.8 5.2 1 23 1439 1462 1439 1462 0.97

13 16 0.005 0.44 12.2 3.9 1 23 1496 1520 1496 1520 0.97

14 16 3.6 3.2e+02 3.2 0.4 1 23 1576 1599 1576 1599 0.93

15 16 0.0061 0.54 11.9 0.5 3 23 1654 1674 1652 1674 0.96

16 16 0.014 1.2 10.8 5.9 1 23 1680 1702 1680 1702 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	8e-05	0.0071	17.8	0.9	1	23	148	170	148	170	0.98
2	16	4.2e-05	0.0038	18.7	0.3	1	23	186	208	186	208	0.98
3	16	8.5e-05	0.0075	17.7	2.1	1	23	214	236	214	236	0.99
4	16	2.8	2.5e+02	3.5	0.1	1	23	334	358	334	358	0.87
5	16	7.1	6.3e+02	2.3	3.6	2	23	364	386	363	387	0.93
6	16	0.41	37	6.1	0.9	1	17	437	453	437	457	0.77
7	16	0.14	13	7.6	0.1	1	23	602	624	602	624	0.96
8	16	0.038	3.4	9.4	0.2	1	23	631	653	631	653	0.98
9	16	0.0015	0.14	13.8	3.1	1	23	659	682	659	682	0.97
10	16	0.0039	0.34	12.5	3.3	1	23	1086	1109	1086	1109	0.95
11	16	0.00045	0.04	15.5	1.3	2	23	1412	1433	1411	1433	0.97
12	16	0.25	22	6.8	5.2	1	23	1439	1462	1439	1462	0.97
13	16	0.005	0.44	12.2	3.9	1	23	1496	1520	1496	1520	0.97
14	16	3.6	3.2e+02	3.2	0.4	1	23	1576	1599	1576	1599	0.93
15	16	0.0061	0.54	11.9	0.5	3	23	1654	1674	1652	1674	0.96
16	16	0.014	1.2	10.8	5.9	1	23	1680	1702	1680	1702	0.98

Sequence Information

Coding Sequence: ATGCAAGATATGGCCACCATGCAGCAGCAGTGTACGGCCACGGCCGCTACGTCGCCTCCACCTGTCCAAGAAGCCACGTCGAACACCGACGCGGAGACACGACACGAGTCATCGCAGGCGATTAGCGACGACAGCCTAGCATCGTCGCCCGAACATAACGATCTCACAACGACCAGACGACACAAGATCACCAGCGTCGTCGATCTGAAATGCCAAAACAACAACGAAATCAACGAGAACAACGAGAATCTCGTATCGAAATACGAATTGCCAAAGAAAGTGAATACGAAGTTGAGCGTCAGTTCGAACATCTCCGAGAACAACGAAGATTATTCCGACGGTGAAAGTATCAAGGATACGAGTTCGCTGAAATCCGATCGGGACGACGCCAAAATGGAGACTAGTCAAGACGTCGATAGCAGCGCCGATTCGGAAATGAAATACATGTGTCCGATATGCGAGAAGATTCTCTCGTCGCAACACGACTTCACTCTGCACATCCGTTCCCATAACAACGACAACGAGACTGCCGAGATCGCTTTCTCGCCCAAGGGTTACTCGTGCAAGATCTGCAACAAAGTGCTCAGTTCGTCGAGCTCTTTGGACCGACACGTTCTAGTGCATTCGGGCGAACGTCCGTTCAAGTGCCGGGTTTGCGCCGTGGCGTTCACCACCAACGGTAACATGCACCGTCACATGCGGACACACAACAGTCCCAAGTCGAACGATTACGAGAGCGACGGAAGCACCGACGACTCGACTGGCTCCTTGAATCAGAACGGGAAGAGTCCGGGATCGCCGaccaacaataacaacaacaagaaaCGTCGCGTCGGCACGCCGGGAATTGAACAGGAGAAAACGCCGGAACTATCTCCCGAGgctaataacaataacaaaagaAAAGTGGCGGAGATCCTCGGGACGGAAGTCGATCCCGGGAAGCGGCGCATGAAAAACCTTGCCAACAACCTACCCGAATATTGTACCCCGCAACGGTTTCAATGTCCTGTGTGCGAACGCGAGGATTTCGCTTCGTTGAACGTCCTCGAGACTCACCTGGAGTCGTCCCATCCCGAGTACAAGATCCGTTGTCGCAGCTGCGACCTCGACTTCAAGAACCACCGAGTGTTGAATCTCCACCGCTTCATGGTCCACCATGACAAGGAGACGGCCAGCAACTTCAACGCGTCCGTCCTCGGCTTCAAGGACCTGACCTTCATGGACTTCTCGAGCGAGAAGTTCCCACACATCGCCCGGGCCGTCTGCGAGCAGAAACTCCACCAGGCATCGTCGGCTTATCACAACTTCCAGTGCGACAAGTGCGGACGCGCTTTCCCCTGCGGCTCGGCGCTGAGCATCCACCACGACGATTGTTACAACTCCGCGGAGAGACCCGGCTCGGGCGAGGGCAACTCTCCCACCGATCTATCCCGCAGGACGACGCCCGTCAAAGACCGGGTATCCAGCGACGAAGAAGTCGAGGAGAAAAAGAGGGAAGATTTTTTCGCCGGGTTGGATCTGCAGAACAAGTCGATGCCGACCTCGCCGGTGACGCCGAAACGTCAGGAGCAGAAATTCGAGAGTGCATCTTATTTCAAATCCGAGCCGAAAGATCTGGCCGACATTCAGAGTATAATATCTGTTAGCAATACCGGTGGACTCCGACTACAAGATCTGACAAAGTCGCCCGTCGTCAACGGCAGTCTAACGCCGTCGGACAGGAGCTATTCGGACGCCAACGAAGAGGAACAACAGGACTGTTTCGCGTCGGAATTCAGGAAGATGAAACTAAAAGGAGAATTTCCCTGTCGTTTGTGCTCGGCAGTTTTCCCGAACTTGCGCGCTCTCAAAGGTCACAATCGCGCGCACCTGGTGTCGGGTAACGTGTTCCGATGCAATATGTGTCCGTATTCGAACGCTGACAAGGCAATACTGATACGTCACATGCGTTCGCACAACGGCGACCGTCCCTACGAGTGTTCGTTGTGCAACTATGCGTTCACCACCAAGGCGAACTGCGAGAGACATCTGCGCAATCGTCATTCGAAGCTCGGCAGGGACGAAGTGAAAAAGTCGATCATTTATCATCCTTCCGAAGATCCGACAAACGATCTCGAATTGCAGGCCAAGATTTCGGGAGGGAGCGACGCAAAACGATCTCTGAACTTCAATCACTCGACTGAGGATCTGAGTCAGCCGGAACGTTTCGAAGAGAAATACCAAAACAAAATTAGTACTGAAAAGTCAAAGACTAGTTTCGAGCGATTCGATAGTTTTGCCGTTGATAGGCGTTCGCCCGTTGTAGTCATAAACGATCGCCCTTGGGACACGCACGAAGTCGCAACAATGACTAGTCCAAATTGCGATGACAGCGAGTCCAGTAACGAGAGCGACAACAGCAACGACGATAATAACTTAGTCAATTTAAccataaacaacaacaacaacaacaacctaCCTTTCAAATTATCCGAGCGCCAAAGAAGTAATTCGAGTCAGTACAGTCCGAACAACAACACCCCGCTGGACCTGAGTATGGATGTGCTCGATCTCAGCAAGAAGAGTACCAACAGCTCGACAAAAAATGTCGACTTGGAACCTCAGGATTTGTCGAAAAAGTCGAGCCCGCCCGAGTACAACGACAACTCGAAGAAGTATATTTCCGTCGTCGAAAAGTCCCACCTGCAGGCGCAGTTAATGTCGAGACCGCCGAGTCCCACTCCTAATCAAATACCGAAAGTCGATCTCAACATGGCGAGTTTCTACGCAGCCAATCCGCACGCAATCTACATGAACAACAACGCCTTCCCCTTCCCTCCTTCCCCCTTCATGAACCCTTACTTCATCCCGCCGCAGCATCCCATGGGGCTACTTCCGCCCGCCAACCTTCAGGAGTTTGCCGAGATGCGGGACAGGAGCCTGAAGGAGTTGATCCGAGGATTGCAGATGTCCGGAGGCACGATGCTGGACCCGATCGCCATGGCAACCGCTGCCGACAAGCTACAGCAGCTTCACCAGCAGGCGATAGCGGAGTTTGCTCGCAACAAAGAGATGCAGTTCAACGAGAGCAAGGTGGAAGAACGGACGCCGGCGAAGGAAGAGAAAGTGGTGACGAACATCGCCAAGCTGTCGATCAACAAGGTGAACCCGTTGAAGTCTCGCGAACGAGACAACTCGTCGGTGAAAATGGTGATAAAGAACGGGGTTCTGATGCCGAAACAGAAGCAGCGTCGTTACCGAACGGAACGTCCGTTCTTCTGCGAACACTGTTCGGCCAGATTCACGCTCCGTTCGAACATGGAGCGGCACATCAAGCAGCAACATCCCGAGTTCTGGACGCAACGGCAGCGCGGGAACGTCAGCGGAGGACGGAGGAATCCGAACGCGAGTCTCGGTCAAGACTCGAATAGTCAAAACCCTCACGAATTGAAGGGGGACGGGCCGAACAAACCTCAGCTGATGAGCATACAGATACCAAATCACATGTCGATGGTGAACAATTATTCGGGTAGTTTCGACATGAAACCAAAGAGCGTAGAAGAGATCTACGAAACCAAAGAGAAACATAATATCgctaacaataataacaataaagtGTTTATTTCCGACGAAGTGAAATACGCCATCGCTCAACAACTCAAGTCGAAACTTAACAATCCGATTCAGAAGCAGTTCCGAGACGAAACGGAAGAAGACGACGAGTTGGTCATCGACGAAGAAGACAACGAAGAAGACAAAACCAAAGACGAAGACTTGAAAAACGCAAAGAATTCAGAGCTCGTGCGGAGGGACGTCGATTTCGAAGAGGGCTACAAATCGTTCAAAGACACATTCTTTCGCGGCATGAAGTCGGAATCGAAACTGGACCTGTACAAGGGTGTCCAGAATGTGGACCTCAAGGGCTACCTGAAAGAAGCAAAGGAGCGGGGCCACCTGAAGGAGATGGAGATGCGTCGCAAGGAGATGAAGAGCAAGGAGGAGAGCGTGGATCTGGCGAGCGTCAGTCGGCTGTTGGACAACGCCACGTCGCAGACGCAGGCGTTCCAGCAGTACTTCCAGCGGGCGCACGATCACGAGGAGGAGGGGGGGCCGGAGGAGGGGTCGGAGGACGACGAGGAGGGACTGGTCGCCGCTAGCGATCACTCGGGCAGCGACGAGAATAGATCTGACCTCGAGAACGGCGCGACCAACAAGAAAAAGTCTGCCTACTCGCTGGCGCCCAACCGCGTCTCTTGCCCGTACTGCCACCGCAAGTTCCCGTGGTCGTCTTCTCTCCGCCGCCATGTCCTCACCCACACCGGTCAGAAGCCGTACAAGTGCGCTCACTGCCCGCTCCTCTTCACCACCAAGTCCAACTGCGACCGCCACCTTCTGCGCAAGCACGCCAACACCACCCCCCCTTCCGCCGTCCCCGACGCCTCCCCCCTCGCCCCCCAGACCCCGCAGACGTCCTACACGATGCGCAACGTCCCTGAACGCCCGTACAAATGTAACCACTGTCCCAGTTCGACGTTCTCGACGCTAAGCAATTTGAAGAAACACGTCACGACGAAACATCCGAATTCCGCGACCAAAATCGAGGAAGTCGCAAGCAACGACGAAAGCCACGACAGTGAAGAGGAGAACGAAGAGGAGCCGGCGGTCGCGGAAAAGCCGGTCACGGAGCCAGGTCGCGGACTGGGAGACGCGGCGTCCACGACCTCATCAACGTCGGACCTCCCGTTCAAGTGTCACCTGTGCGAGGGGTCGTACGGAGAGCGGCAGGAGGCTTTGGAGCACATCCGGGAGAACCACCCGACCGAGTTCACGTTGCTGATGTCGAAGGGAGCGCTGGAGAACAACGGGGGGACGCACGAGGATAATAACGGGAACGGCCCGGAGGAGGTGACGCCCGGGGAGGAGAGCCTGGAACAGCTGAGGGGGAAGTTTCCGGACTATGCAAACAGAAAGGTGATGTGCGCTTTCTGCCTGCGCCGCTTCTGGTCTGCCGAGGACCTGCGTCGCCACATGCGCACCCACACGGGTGAACGCCCGTTCAGCTGCGACATCTGCCGGCGCCGCTTCACGCTCAAGCACTCGATGCTGCGTCACCGTAAGAAGCACAGCGCCACCGACACCTCGCCTCTGAGCGGCGACGACGAGCCCACGTTCAAGACGTCCCGCTACGACGACACCCCGACCAACAAGGCCGAGAAACGATCCAACGGTTTCCTGACGGCTCAGTCCGTCAAAACAGAGAAGAATCAGTTTGCGGAAAACAACGCTAGAATCAACGGATTTCTCGACGGTCAGAACGGCAAGGTGAAACTGACAaaccacaataataataatataatgggTGCGATGAAGAATCTGACGTCTCGATATATCATGGAGAACCCGTGGCCGGGCGTCAACGGTGAAAATAAGTTCCCGGACGAACGGAGAGATAAAGACGACGAAACCGACTTGATCGGGAATCTGTTGGGAATACAAGATAAATCGATTATCGAGAAGATGTTGGTGTCCAAGTCAGCGGATGACGCGGCTAAACTTCTCGGTGTTGGCAATCGTGAATGA
Protein Sequence: MQDMATMQQQCTATAATSPPPVQEATSNTDAETRHESSQAISDDSLASSPEHNDLTTTRRHKITSVVDLKCQNNNEINENNENLVSKYELPKKVNTKLSVSSNISENNEDYSDGESIKDTSSLKSDRDDAKMETSQDVDSSADSEMKYMCPICEKILSSQHDFTLHIRSHNNDNETAEIAFSPKGYSCKICNKVLSSSSSLDRHVLVHSGERPFKCRVCAVAFTTNGNMHRHMRTHNSPKSNDYESDGSTDDSTGSLNQNGKSPGSPTNNNNNKKRRVGTPGIEQEKTPELSPEANNNNKRKVAEILGTEVDPGKRRMKNLANNLPEYCTPQRFQCPVCEREDFASLNVLETHLESSHPEYKIRCRSCDLDFKNHRVLNLHRFMVHHDKETASNFNASVLGFKDLTFMDFSSEKFPHIARAVCEQKLHQASSAYHNFQCDKCGRAFPCGSALSIHHDDCYNSAERPGSGEGNSPTDLSRRTTPVKDRVSSDEEVEEKKREDFFAGLDLQNKSMPTSPVTPKRQEQKFESASYFKSEPKDLADIQSIISVSNTGGLRLQDLTKSPVVNGSLTPSDRSYSDANEEEQQDCFASEFRKMKLKGEFPCRLCSAVFPNLRALKGHNRAHLVSGNVFRCNMCPYSNADKAILIRHMRSHNGDRPYECSLCNYAFTTKANCERHLRNRHSKLGRDEVKKSIIYHPSEDPTNDLELQAKISGGSDAKRSLNFNHSTEDLSQPERFEEKYQNKISTEKSKTSFERFDSFAVDRRSPVVVINDRPWDTHEVATMTSPNCDDSESSNESDNSNDDNNLVNLTINNNNNNNLPFKLSERQRSNSSQYSPNNNTPLDLSMDVLDLSKKSTNSSTKNVDLEPQDLSKKSSPPEYNDNSKKYISVVEKSHLQAQLMSRPPSPTPNQIPKVDLNMASFYAANPHAIYMNNNAFPFPPSPFMNPYFIPPQHPMGLLPPANLQEFAEMRDRSLKELIRGLQMSGGTMLDPIAMATAADKLQQLHQQAIAEFARNKEMQFNESKVEERTPAKEEKVVTNIAKLSINKVNPLKSRERDNSSVKMVIKNGVLMPKQKQRRYRTERPFFCEHCSARFTLRSNMERHIKQQHPEFWTQRQRGNVSGGRRNPNASLGQDSNSQNPHELKGDGPNKPQLMSIQIPNHMSMVNNYSGSFDMKPKSVEEIYETKEKHNIANNNNNKVFISDEVKYAIAQQLKSKLNNPIQKQFRDETEEDDELVIDEEDNEEDKTKDEDLKNAKNSELVRRDVDFEEGYKSFKDTFFRGMKSESKLDLYKGVQNVDLKGYLKEAKERGHLKEMEMRRKEMKSKEESVDLASVSRLLDNATSQTQAFQQYFQRAHDHEEEGGPEEGSEDDEEGLVAASDHSGSDENRSDLENGATNKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPYKCAHCPLLFTTKSNCDRHLLRKHANTTPPSAVPDASPLAPQTPQTSYTMRNVPERPYKCNHCPSSTFSTLSNLKKHVTTKHPNSATKIEEVASNDESHDSEEENEEEPAVAEKPVTEPGRGLGDAASTTSSTSDLPFKCHLCEGSYGERQEALEHIRENHPTEFTLLMSKGALENNGGTHEDNNGNGPEEVTPGEESLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSATDTSPLSGDDEPTFKTSRYDDTPTNKAEKRSNGFLTAQSVKTEKNQFAENNARINGFLDGQNGKVKLTNHNNNNIMGAMKNLTSRYIMENPWPGVNGENKFPDERRDKDDETDLIGNLLGIQDKSIIEKMLVSKSADDAAKLLGVGNRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00242552;
90% Identity: iTF_00242552;
80% Identity: -