Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023328.1:40816444-40824614[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.22 19 7.0 1.1 2 21 251 270 250 271 0.92

2 14 7.1 6.3e+02 2.2 0.7 1 23 278 302 278 306 0.87

3 14 0.0013 0.11 14.0 4.4 1 23 315 337 315 337 0.97

4 14 4.4e-05 0.0039 18.6 4.1 3 23 378 399 377 399 0.97

5 14 4.6e-05 0.0041 18.6 0.9 2 23 484 505 483 505 0.97

6 14 0.00095 0.084 14.4 2.1 1 23 511 534 511 534 0.98

7 14 0.0003 0.026 16.0 1.3 1 23 542 564 542 564 0.97

8 14 1.4e-06 0.00013 23.3 0.5 3 23 584 604 583 604 0.99

9 14 2.6e-06 0.00023 22.5 0.8 2 23 628 649 627 649 0.96

10 14 0.065 5.7 8.7 0.4 1 23 657 679 657 679 0.84

11 14 2.9 2.5e+02 3.5 4.1 1 21 685 705 685 706 0.91

12 14 0.14 12 7.6 8.9 1 23 794 816 794 820 0.71

13 14 5.8e-05 0.0051 18.3 1.4 1 23 920 942 920 942 0.99

14 14 0.1 9.2 8.0 0.1 2 23 955 977 954 977 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.22	19	7.0	1.1	2	21	251	270	250	271	0.92
2	14	7.1	6.3e+02	2.2	0.7	1	23	278	302	278	306	0.87
3	14	0.0013	0.11	14.0	4.4	1	23	315	337	315	337	0.97
4	14	4.4e-05	0.0039	18.6	4.1	3	23	378	399	377	399	0.97
5	14	4.6e-05	0.0041	18.6	0.9	2	23	484	505	483	505	0.97
6	14	0.00095	0.084	14.4	2.1	1	23	511	534	511	534	0.98
7	14	0.0003	0.026	16.0	1.3	1	23	542	564	542	564	0.97
8	14	1.4e-06	0.00013	23.3	0.5	3	23	584	604	583	604	0.99
9	14	2.6e-06	0.00023	22.5	0.8	2	23	628	649	627	649	0.96
10	14	0.065	5.7	8.7	0.4	1	23	657	679	657	679	0.84
11	14	2.9	2.5e+02	3.5	4.1	1	21	685	705	685	706	0.91
12	14	0.14	12	7.6	8.9	1	23	794	816	794	820	0.71
13	14	5.8e-05	0.0051	18.3	1.4	1	23	920	942	920	942	0.99
14	14	0.1	9.2	8.0	0.1	2	23	955	977	954	977	0.94

Sequence Information

Coding Sequence: ATGGATGGCCAATTGATCCAGAGATGGATGAATTCATGTCGACTGTGTTTGCTGGATGATGGAGTTAAATTACCTATATTTGGAGAAGAAGGAATAGTCCGAGAAGTGGCTCATAAAATTCAATCATGTTTTCCAATTGTACTCTACAATGCAGATCCATTATCAAAAATCATCTGTCAAAGGTGTTTGTTTATGTTGGATACGGTGTACAGTTTTCGACAGAAATGCGTAGAAACAAATTCCGTATTCACCAGTCACCTGTTGTCTTTGAAAAACAACAGTAGCTCTGTGAAACAGTATTTGCAGGCTTTAGAGAAGAGTGGTGCCCTGCCAAATTCTTCCACCTCAGTGCAACAGGCATCAAAGTCGTCGACTCCAGTTCGTGAAACAAGAACCGATTCTCAGCCGTTGCCTCAAGCTACGTCAAGGCCTCCTTCTACAACGCCTCGGAATCAGGAACCAAGGCCCTCTGGAAGTCTTTCGGCTTCGTACCGTGCAATTTCCAATTCAGATCCTTTAGCCAACTCTTCAGACTTCCACCCGCCTGTAGTTCGAATTAAACAGGAGAAAACCACAAAGTCAGTCAATCCATTGATTGTCAGTGTTGTCGGCAGCTACTCAGACAGGCGCCCTCCATCAGAAGCATCTACCGCTAGCAGTAGTGTATCAGATACAGTTGTAATCAAACAAGAATTCAGACATTTATCGGTAAAACCCCGGGGTTCACCACGACAAGTTTGTACACCATGGTATTGTAAGCCATGTAACAAGTACTATAAATCAAGAGGTACATTATACAAACATAAGAGATACTTTTGTCCATCTAAGCATTTTAATTGCGGGAAATTCAAATGCAGTGAAGAATTCGAAACGGAGACGGCAAGAATTCAACACTGGATTTCACATCTCCGTGTCCACGTCTTTTTAAAGCCAGAAGAACTTCATTCGTGTGACTCATGTGACAAAAAGTTTGCTTACGACCATATGCTCAGGAATCATATGAAAGTGCATATGAGTACTGAAAATGGAGTAAATGGAGACGAATCTCGAAGAATGACATCACATCTTTCAATTCGTAGACCGTTCCCTTATAAGAGGTCGAGGTTGAATGTTGGTGGTCGGAGAGCATTTTGTAAATACTGTGATCGGTCATATTCACGCCAGACAAAACTAAATTGGCACATGAAAGTTTGCCACAAATCCGAATATATTGCTACCGGTACCAGAAGTCAGTCTTCTGTGCCTTCTGTGCCTTCTGCACCTTCTGCTCCTTCTGCTCTATCCCCAATAGCTTCAAATGAATCGGGTAGTAAACCGTTCATTGAAGAATTTCCCCCTAGAGTTTCCACTCCTAATCCTAAATATCGACCTGCTCCTCTTTCCAAACAAACAGCGAGACAGTCATCAGAATCTCACGGATTGTTACGTACTCTGCTGCAGAAAAGTCTCAAGTGTGTCGTGTGTTTGAAAACTTTTACCTCGCAACAAGGTCTGAGCAATCACATGCGAAGTCACGGACCGAAGAAAATCTACAGGTGTCTCACTTGCAGCAGAGTATTTGGCTCGAAGAAGGGACTGATGTATCATCAAAAGACAAGGCACGCAAGCGGTGGAGTAGATGCATATCGTTGTAGACCGTGCAGTCAAACTTTCAAGTCAAGGTCCGAGTTGTTAGTTCATATGTCGACTCACGAGAAGAATAAGAAGGAACCAGTTGATCCTCTCATGGACAACACTAAACTGTTGCTGTGTAGTTATTGCAACCAAGTGTTTTCTCAGTCCTCGGAGTTGAAAGCTCATTTGATGACGCATAAACTAGTTACCGCCCAGTCGACTGACCGTATTGTACCACCAGCTTCAGACAAGCCTGGGATGATATGGCCTTGTCAAATCTGTTCTAAGGAATTCACCAAGAAACGAAATTTGGTGCGTCACATGAAAATCCATGAGAAAAGAATGCACTCGTCTTATCCGTGTAACACTTGCGGAAAGAAGTTTCTCTCCAAAGCGTCGGCTCTTAAGCACTCGGTTGTCCATTCACTATCAAAGACCTTTCACTGTGCTGTGTGCAACAAGATTTTCTTCAAGATCGAAACGTTGCATAATCATTCGTGCACACCTAACAGTGTAGGCCTGACAATGAACGATGCAGAATCGCCTACAAGAGACATGCCAATGGAAAATCTTCCGTTTGATTCTTTACCTTACGAAGACCAACAACCTATTGCGCATGAGATACCTACTGACAAGACTAAAAACTGCCTTTCTTGTGGGTTTGCACTTGACAAAGACCACAAATGCCAGTACTATCAGAGAGACGGTACGCTAATGTCGTATCAAGTACGTAACTTTAATAAGATTCCAACCAAAAGAAGTTCATACAAGTGTAAAATATGCGGAGCAACATTTGCTTCTTGTTTCTCTCATAATTCTCATATGAAGGTTCATAAGAAGAAACATATACTGAAAGTCCCGAGTTTGGTTCAAGAAGCCACTGCAAAGCTCGTTCACCATAAAAGTACTCTTGATGAGGCGCCCTTCGCTGTTGGTGGCGGCACCTTTACACCTCTCGACCTACGACGATTAACTTCCATTGATACCGGTAGCTCATCGCTTGAGCAAAGGCCGATAGTATCCGAAATTCCCGAATTAATTCCTCCCCCGTTTTCTATAAATCCAGGTGGCACAGTACCCCAGTATTTTCCCGCGCCATCTTACTACAGCCACGATAGTACATTGTTTGACGAGAACGAGTTCTATCAGTGTAGTATCTGCACTAAAACATTCCATTCCGAGCAAGGCCTAGCGTTGCATATAAGATCACATGAAGGTACCGCGACTAAGGTACCAACCGCAAAGATAACCTGCCCATTTTGTTCGCGCAATTACGCAGACGCCCAAGCAATCAATCAACATATTCTACTGAATCATCCAGAATTAAGTGGGATCAAGGAATAA
Protein Sequence: MDGQLIQRWMNSCRLCLLDDGVKLPIFGEEGIVREVAHKIQSCFPIVLYNADPLSKIICQRCLFMLDTVYSFRQKCVETNSVFTSHLLSLKNNSSSVKQYLQALEKSGALPNSSTSVQQASKSSTPVRETRTDSQPLPQATSRPPSTTPRNQEPRPSGSLSASYRAISNSDPLANSSDFHPPVVRIKQEKTTKSVNPLIVSVVGSYSDRRPPSEASTASSSVSDTVVIKQEFRHLSVKPRGSPRQVCTPWYCKPCNKYYKSRGTLYKHKRYFCPSKHFNCGKFKCSEEFETETARIQHWISHLRVHVFLKPEELHSCDSCDKKFAYDHMLRNHMKVHMSTENGVNGDESRRMTSHLSIRRPFPYKRSRLNVGGRRAFCKYCDRSYSRQTKLNWHMKVCHKSEYIATGTRSQSSVPSVPSAPSAPSALSPIASNESGSKPFIEEFPPRVSTPNPKYRPAPLSKQTARQSSESHGLLRTLLQKSLKCVVCLKTFTSQQGLSNHMRSHGPKKIYRCLTCSRVFGSKKGLMYHQKTRHASGGVDAYRCRPCSQTFKSRSELLVHMSTHEKNKKEPVDPLMDNTKLLLCSYCNQVFSQSSELKAHLMTHKLVTAQSTDRIVPPASDKPGMIWPCQICSKEFTKKRNLVRHMKIHEKRMHSSYPCNTCGKKFLSKASALKHSVVHSLSKTFHCAVCNKIFFKIETLHNHSCTPNSVGLTMNDAESPTRDMPMENLPFDSLPYEDQQPIAHEIPTDKTKNCLSCGFALDKDHKCQYYQRDGTLMSYQVRNFNKIPTKRSSYKCKICGATFASCFSHNSHMKVHKKKHILKVPSLVQEATAKLVHHKSTLDEAPFAVGGGTFTPLDLRRLTSIDTGSSSLEQRPIVSEIPELIPPPFSINPGGTVPQYFPAPSYYSHDSTLFDENEFYQCSICTKTFHSEQGLALHIRSHEGTATKVPTAKITCPFCSRNYADAQAINQHILLNHPELSGIKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00242515;
90% Identity: iTF_00242515;
80% Identity: -