Bput023942.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015464.1:8833605-8838883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 32 6.2 1.2 2 21 250 269 249 270 0.91 2 13 0.00028 0.025 15.9 4.3 1 23 314 336 314 336 0.97 3 13 3.9e-05 0.0035 18.6 4.1 3 23 377 398 376 398 0.97 4 13 4.1e-05 0.0036 18.6 0.9 2 23 476 497 475 497 0.97 5 13 0.0058 0.51 11.8 1.8 2 23 504 526 504 526 0.97 6 13 0.00088 0.078 14.4 1.2 1 23 534 556 534 556 0.97 7 13 1.3e-06 0.00011 23.3 0.5 3 23 576 596 575 596 0.99 8 13 2.3e-06 0.0002 22.5 0.8 2 23 620 641 619 641 0.96 9 13 0.049 4.3 8.9 0.2 1 23 649 671 649 671 0.88 10 13 2.5 2.2e+02 3.5 4.1 1 21 677 697 677 698 0.91 11 13 0.011 0.94 11.0 4.9 1 23 785 807 785 808 0.98 12 13 5.1e-05 0.0045 18.3 1.4 1 23 911 933 911 933 0.99 13 13 0.24 21 6.7 0.1 2 23 946 968 945 968 0.94
Sequence Information
- Coding Sequence
- ATGGATGGCCAATTGATCCAGAGATGGATGAATTCGTGCCGACTCTGTTTGCTGGATGATGGAGTCAAGTTACCTATATTTGGAGAAGAAGGAATAGTCCGAGAAGTGGCTCATAAAATTCAATCGTGTTTCCCAATTGTTCTCTACAATGCAGATCCATTATCAAAAATTATCTGTCAAAGGTGTTTGTTCATGTTGGATACGGTGTATAGTTTTCGACAGAAATGCGTGGAAACAAATTCTGTATTCACCAGTCACCTGTTGTCTTTAAAAAATAACAGTAGTTCTGTGAAACAGTATTTGCAGGCTTTAGAGAAGAGTGGTGCCCTGCCAAATTCTTCCACCACAGTGCAACAGGCATCAAAGTCGTTGACTCCAGTTCGTGAAACGAGGATCGAATCTCAGCCGTTGCCTCAAGTTACATCAAGGCCTCCTTCTGTCACGCCTCGAAATCAGGAAACGAGGCCTTCTGGAAGTCATTCAGCTTCGTACCGTTCAAGCTCCGATTCAGATCCTTTAGCCAACTCTTCAGAATTCCACCTGCCAGTAGTTCGAATTAAACAGGAGAAAACCACAAACTCAGTCAATCCGTTGATTGTCAGCGTTGTCGGCAGCTACTCGGACAGGCGCCCTCCATCGGAAGCGTCTACCACTAGCAGTAGTGTATCAGATACAGTTAGAATCAAACAAGAATTTAGACATTCGGTTAAACCCCGGGGTTCCCCGCGACAAATTTGTACACCATGGTATTGTAAGCCATGTAACAAGTACTATAAATCAAGAGGTACATTATACAAACATAAGAAATACTTTTGTCCGTCTAAGCATTTCAACTGCGGGAAATTTAATTGCAGTGAAGAATTCGAAACTGAGACGGATAGAATTCAACACTGGGTGTCACATCTCCGTGTCCATGTCTTTTTAAAACCAGAAGATCTTCACTCGTGTGACTCATGTGACAAAAAGTTTGCTTACGAGCATATGCTTAGGAATCACATGAAAGTGCATATGAGTAATGAAAATGGGGTAAATGGAGAGGAATCTCAAAGAAAGACATCACACCTATCAATTCGTAGACCGTTTCCTTACAAAAGGTCAAGGTTGAATGTTGGCGGTCGGAGAGCATTTTGTAAATACTGTGATCGATCATATTCACGCCAGACAAAATTAAATTGGCACATGAAAGTTTGCCACAAATCCGAAGATCTTGCTGCCAGAAGTCAGCCTTCAGTGACTCCTGCTGCATCCTTAAATGCATCCCCATTAGCTTTAAATGAACCTGTCAGTAAACCATTCATTGAAGAATTTCCCCCTAGAGTTTCCACTCCTAATCCTAAATATCGGCCTGCTCCTCTTTCCAAACAAACGGCGAGACAGTCGTCAGAATCTCATGGATTATTACGTTCTTTGCTGCAGAAGAGTCTCAAGTGTGTCGTGTGTTTGAAGACTTTTACCTCGCAACAAGGTCTGAGCAATCACATGCGAAGTCATGGACCGAAGAAAATCAATAGGTGTCTCACTTGCAGCAGAGTGTTTGGCTCCAAGAAGGGACTCATGTATCATCAAAAGACGAGGCATGCAAACGGTGGGGCAGATGCATATCGTTGTAGACCGTGCAGTCAAACTTTCAATTCGAGGTCCGAGTTGTTACTTCATATGTCGACTCACGAGAAGAATAAGAAGGAACCAGTCGATCCTCTCATGGACAACACTAAACTTTTGCTGTGTAGTTATTGCAACCAAGTGTTCTCTCAGTCGTCTGAGTTGAAAGCTCATTTGATGACGCATAAACTAGCTACTGCACAGTCAACTGATCGTATTGTACCACCAGCTTCAGACCAGCCAGGAATTATATGGCCTTGTCAAATCTGTTCCAAGGAATTCACCAAGAAGCGTAACTTAGTCCGTCACATGAAAATCCACGAGAAAAGAATGCACTCGTCTTTTCCGTGTAACACTTGCGGAAAGAAGTTTCTCTCCAAAGCATCGGCTCTCAAGCACGCAGTTGTACATTCACTGTCAAAGACCTTTCACTGTGCTGTGTGCAACAAGATCTTCTTCAAGATCGAAACGTTGCATAATCATTCGTGCACACCCAACAGTGTTGGGCAGACAATGAACGATACAGAATCTCCGACAAGAGACATGCCAATGGAAGAACTTCCATTTGATCCTCTACCTTACGAAGACCAACCACCCATAACGCATGAGCTACGTATTGACAAGACTAAAAACTGCCTTTCTTGTGGGTTTCCACTTGTCAAAGGCCACAAATGCCAGTACTATCAGAGAGACGGTACGCTAATGTCGTATCAAGTACGTAACGTTAAGATTCCGACCAAAAGAAGTTCATACAAGTGTAAAATATGCGGTGCAACATTTGCTTCTTGCTTCTCTCATAATTCTCACATGAAGGTTCATAAGAAGAAACTTATACTCAAAGTCCCAAGCTTGGTTCAAGAAGCCGCTGCAAAGCTGGTTCACAATGAAAGTAGCGTTAATGACGCGCCCTTCGCTGTTGGTGGCGGCACCTTCACACCTCTCGACCTACGACGATTAACGTCCATCGATACAGGTAGCTCATCGCTTGAAGAAAGACCGATAGGATCTGAAATTCCCAAATTAACTCCTCCCTCGTTTTCTATAAATCCAGGTAGCACGGTACCCCAGTATTTTCCCGCGCCATCTTACTACAGCCACGATAGTACATTGTTTGACGAGAACGAGTTCTATCAGTGTAGTATCTGCACTAAAACATTCCATTCCGAGCAAGGTCTAGCGTTGCATATAAGATCGCATGAAGGTACCGCTACTAAGGTGCCAACCGCAAAGATAACCTGCCCATTTTGCTCGCGCAATTACGCAGACACACAAGCAATCAATCAACATATTCTACTTAATCATCCTGAATTGAGTGGGATTAAGGAATAA
- Protein Sequence
- MDGQLIQRWMNSCRLCLLDDGVKLPIFGEEGIVREVAHKIQSCFPIVLYNADPLSKIICQRCLFMLDTVYSFRQKCVETNSVFTSHLLSLKNNSSSVKQYLQALEKSGALPNSSTTVQQASKSLTPVRETRIESQPLPQVTSRPPSVTPRNQETRPSGSHSASYRSSSDSDPLANSSEFHLPVVRIKQEKTTNSVNPLIVSVVGSYSDRRPPSEASTTSSSVSDTVRIKQEFRHSVKPRGSPRQICTPWYCKPCNKYYKSRGTLYKHKKYFCPSKHFNCGKFNCSEEFETETDRIQHWVSHLRVHVFLKPEDLHSCDSCDKKFAYEHMLRNHMKVHMSNENGVNGEESQRKTSHLSIRRPFPYKRSRLNVGGRRAFCKYCDRSYSRQTKLNWHMKVCHKSEDLAARSQPSVTPAASLNASPLALNEPVSKPFIEEFPPRVSTPNPKYRPAPLSKQTARQSSESHGLLRSLLQKSLKCVVCLKTFTSQQGLSNHMRSHGPKKINRCLTCSRVFGSKKGLMYHQKTRHANGGADAYRCRPCSQTFNSRSELLLHMSTHEKNKKEPVDPLMDNTKLLLCSYCNQVFSQSSELKAHLMTHKLATAQSTDRIVPPASDQPGIIWPCQICSKEFTKKRNLVRHMKIHEKRMHSSFPCNTCGKKFLSKASALKHAVVHSLSKTFHCAVCNKIFFKIETLHNHSCTPNSVGQTMNDTESPTRDMPMEELPFDPLPYEDQPPITHELRIDKTKNCLSCGFPLVKGHKCQYYQRDGTLMSYQVRNVKIPTKRSSYKCKICGATFASCFSHNSHMKVHKKKLILKVPSLVQEAAAKLVHNESSVNDAPFAVGGGTFTPLDLRRLTSIDTGSSSLEERPIGSEIPKLTPPSFSINPGSTVPQYFPAPSYYSHDSTLFDENEFYQCSICTKTFHSEQGLALHIRSHEGTATKVPTAKITCPFCSRNYADTQAINQHILLNHPELSGIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243555;
- 90% Identity
- iTF_00243555;
- 80% Identity
- -