Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023339.1:3656021-3660970[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0002 0.018 16.6 0.5 2 23 162 183 162 183 0.98

2 14 0.0064 0.57 11.8 9.2 1 23 189 211 189 211 0.97

3 14 3.1e-05 0.0027 19.1 2.2 1 23 217 239 217 239 0.98

4 14 0.0023 0.2 13.2 3.8 1 23 245 267 245 267 0.97

5 14 0.016 1.4 10.6 7.4 1 23 273 295 273 295 0.97

6 14 0.00021 0.019 16.5 3.9 1 23 301 323 301 323 0.98

7 14 0.00024 0.021 16.3 4.1 1 23 329 351 329 351 0.98

8 14 3.9e-05 0.0035 18.8 4.4 1 23 357 379 357 379 0.99

9 14 0.00059 0.052 15.1 3.2 1 23 385 407 385 407 0.98

10 14 0.0005 0.044 15.3 3.3 1 23 413 435 413 435 0.97

11 14 0.00038 0.033 15.7 1.7 1 23 441 463 441 463 0.98

12 14 0.00047 0.041 15.4 3.1 1 23 469 491 469 491 0.98

13 14 0.0002 0.018 16.6 4.7 1 23 497 519 497 519 0.98

14 14 0.0022 0.19 13.3 4.5 1 23 525 547 525 547 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0002	0.018	16.6	0.5	2	23	162	183	162	183	0.98
2	14	0.0064	0.57	11.8	9.2	1	23	189	211	189	211	0.97
3	14	3.1e-05	0.0027	19.1	2.2	1	23	217	239	217	239	0.98
4	14	0.0023	0.2	13.2	3.8	1	23	245	267	245	267	0.97
5	14	0.016	1.4	10.6	7.4	1	23	273	295	273	295	0.97
6	14	0.00021	0.019	16.5	3.9	1	23	301	323	301	323	0.98
7	14	0.00024	0.021	16.3	4.1	1	23	329	351	329	351	0.98
8	14	3.9e-05	0.0035	18.8	4.4	1	23	357	379	357	379	0.99
9	14	0.00059	0.052	15.1	3.2	1	23	385	407	385	407	0.98
10	14	0.0005	0.044	15.3	3.3	1	23	413	435	413	435	0.97
11	14	0.00038	0.033	15.7	1.7	1	23	441	463	441	463	0.98
12	14	0.00047	0.041	15.4	3.1	1	23	469	491	469	491	0.98
13	14	0.0002	0.018	16.6	4.7	1	23	497	519	497	519	0.98
14	14	0.0022	0.19	13.3	4.5	1	23	525	547	525	547	0.98

Sequence Information

Coding Sequence: atgGCTAGTGGATCCTGGCAGCTTGTGCACAGGATCCCTGGCCATGGTGGAGAGGAGGGAGGATGCAGACacgtggctgccaACGTGACCAAGTGTGGAGTAACGGGACGGATCTTCAAGTCGGCGGCTCCGAACACGGAACCAGGCGGGCTACTCGTACCGGAACGGGAAGGATCGGATATCCCGGATGAAGAACGTGCATTTCGGCCGGAGGAGTTTGCGTTCGTGGTGATCAAAGAAGAACCGTATGAAGATGGTTGCATAAACCAAGCAGATAACGTTGACACGGATTCGAGCACCGAAAACGACACGAATACCGACCCAGTGTCGATCAAAACTCCATCTACGAGTGTGGACAACGAAACGGAACctacgacgacgacgacgacggtcTCCACTAAAAGAAACGGCAAGAAAAGAGTGCTGTCGGAGAAGTACAAGCAAATGAAGGCGAACAAGAGGTCCAACACAATTCTGAACAACACTTGCACTGTTTGCGGCTACCAAGCGGACAATAAGAGCTACCTGAAGATCCACATGATGAAACATACTGGAGAaaagccattccactgcaaagAATGTTCTTATAAATGTAGACAATCGTGCGATCTGAAGCGACATATGTTGATCCACAGCGGTGTACACCCATTCCAATGTAAACAATGCCCTTATAAATGTAGATCATCGAGTGCTTTGACCTCACATATATTAGTTCACACTGGCGAAAAACCGTTCCACTGCAAGCTATGCACGTATACGTCCAGAACGGCCAACTCTCTCACCACTCACATGATGAACCACACCAAAGAACTGCCGTTCCACTGCGCGGAGTGTTCGTTCCGTTGCAAGAAACAGAGCACTCTGAAGACGCACATGCTCAAGCACTCGGACGAACAGCCGTACGAGTGCAAGCAATGTCCGTACAAGTGCAAACAGGCGAGCACGCTGAGAAACCACACGCTGCGGCATATCGGCGACAAGCCGTACCATTGCGCCGAGTGCGATTACAAGTCGATACGGTCGACGCACCTGAAAAAACACATGATGATACACACCGGTGAGAGACCGTTTCAGTGCAAGGTCTGTTCGTATCGGTGTCGGACGTCGAGCAATCTCCGGTCTCACGTGTTGACGCACACCGACGAGTTACCTTTCCAGTGTAAAGAATGTGATTATAAATGTAATTTGAGTAGTAGTTTAAAGATTCACGTGCTAAAACACACCGGCGAACAACCCTTTCAGTGTCTAGAATGTACGTACAAGACTTTTAAATCATCTCATCTGAAAGCGCATATGATGATACATACAGGTGAGAAACCATTCCAGTGCGTGCAATGCCCTTACAAGTGTTCCCGATCGTCGGACATGAAGATTCACTTGTTGATACACACGGGAGAGCAGCCGTTCGAGTGTCGCGAGTGTCCGTACAAGTGCAGGTCGTCGAGCGTTCTCAAGTCGCACATGTTGAAACATTCCGCGGACAAGCCGTTCGAGTGCGGCCAGTGCGAGCACAAGTGCAAGACGGCCAGTCTGTTGAAGCGGCACGTCAGGACGCACACGGGGGAACAGCCGTACCAGTGCAAGTTGTGTTCGTTCAAGTGCGGACAGACGAGCTATCTCAAGAAACACATGTTGATTCATGCGGGCGAAGTGCCGTTACAGTGTGTAGAATGA
Protein Sequence: MASGSWQLVHRIPGHGGEEGGCRHVAANVTKCGVTGRIFKSAAPNTEPGGLLVPEREGSDIPDEERAFRPEEFAFVVIKEEPYEDGCINQADNVDTDSSTENDTNTDPVSIKTPSTSVDNETEPTTTTTTVSTKRNGKKRVLSEKYKQMKANKRSNTILNNTCTVCGYQADNKSYLKIHMMKHTGEKPFHCKECSYKCRQSCDLKRHMLIHSGVHPFQCKQCPYKCRSSSALTSHILVHTGEKPFHCKLCTYTSRTANSLTTHMMNHTKELPFHCAECSFRCKKQSTLKTHMLKHSDEQPYECKQCPYKCKQASTLRNHTLRHIGDKPYHCAECDYKSIRSTHLKKHMMIHTGERPFQCKVCSYRCRTSSNLRSHVLTHTDELPFQCKECDYKCNLSSSLKIHVLKHTGEQPFQCLECTYKTFKSSHLKAHMMIHTGEKPFQCVQCPYKCSRSSDMKIHLLIHTGEQPFECRECPYKCRSSSVLKSHMLKHSADKPFECGQCEHKCKTASLLKRHVRTHTGEQPYQCKLCSFKCGQTSYLKKHMLIHAGEVPLQCVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00242488;
90% Identity: -
80% Identity: -