Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023334.1:24402416-24421617[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00081 0.072 14.7 4.1 1 23 241 263 241 263 0.97

2 11 2.5e-05 0.0022 19.4 1.5 1 23 269 291 269 291 0.98

3 11 0.00025 0.022 16.3 2.3 1 23 297 320 297 320 0.96

4 11 0.00021 0.018 16.5 2.9 1 23 326 348 326 348 0.98

5 11 0.00025 0.022 16.3 1.9 1 23 354 376 354 376 0.99

6 11 2.8e-05 0.0025 19.2 1.2 1 23 382 404 382 404 0.98

7 11 0.0075 0.66 11.6 3.1 1 23 412 435 412 435 0.96

8 11 0.00043 0.038 15.5 2.1 2 23 442 463 441 463 0.96

9 11 0.00019 0.017 16.7 0.6 1 23 469 491 469 491 0.98

10 11 2.5e-06 0.00023 22.5 2.4 1 23 497 520 497 520 0.97

11 11 4e-08 3.5e-06 28.2 0.8 1 23 534 556 534 556 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00081	0.072	14.7	4.1	1	23	241	263	241	263	0.97
2	11	2.5e-05	0.0022	19.4	1.5	1	23	269	291	269	291	0.98
3	11	0.00025	0.022	16.3	2.3	1	23	297	320	297	320	0.96
4	11	0.00021	0.018	16.5	2.9	1	23	326	348	326	348	0.98
5	11	0.00025	0.022	16.3	1.9	1	23	354	376	354	376	0.99
6	11	2.8e-05	0.0025	19.2	1.2	1	23	382	404	382	404	0.98
7	11	0.0075	0.66	11.6	3.1	1	23	412	435	412	435	0.96
8	11	0.00043	0.038	15.5	2.1	2	23	442	463	441	463	0.96
9	11	0.00019	0.017	16.7	0.6	1	23	469	491	469	491	0.98
10	11	2.5e-06	0.00023	22.5	2.4	1	23	497	520	497	520	0.97
11	11	4e-08	3.5e-06	28.2	0.8	1	23	534	556	534	556	0.97

Sequence Information

Coding Sequence: ATGTCAGATCAGAAACCATCAACTTCAACAGTCGCTACCGTCGACATGGCAACTGTGTCTGGTACGACGATGTCCGCTGTCGAGATAAAGATGGAAGGTCATGAAAATCCTGAGACAATTTCTGACATTCAGAATTATCTGGCAACATTCAATAAGGAGATTCAAGTTGGCGACCAATCAATACAGCACGTTACAGTTCAACAAGTGGTAACAGAAGGCCAGGAAGATGAAGGCGGTACTTATTTTGTCGACCAATCAGGCCACTACTACTATCAAGCTAGTTCAGATCAGCAACCTGTCATGACGGTTGTGTCTGGAATAGCTGACCCGACAGAAGAAGGGGAAGGTGACTCGGAGCCCACGTACGTAGCCATGCAACCTCAAGACGAACAAATGGAAGACCAACTAGCGATGGAAGCCTCGGACGAAGGCGAGATTGTGACCGGCGATCCGACAGGTCAGATGATTCTCAACTCGAACGACGCGTATCAGACGGTGACGATCGTCCCGTCTGACACAAATCCGGGGGAAGTTAGTTACGTGCTCATCGTGCAGCAACCCGACGACAAGGACGGCGATAAAATGGACGACCAAGATCTCACTGTGTACGACTTTGACGAGGGAGAAGAAGTCAACAATCCGGTGGAGTCTGAGAATGAAGACGACAAAACGAAGATCATCAAGATAATACCGAAGAAGTCCCAGACTGTCACGCAGGCTCACATGTGCAACTACTGCAATTACACAAGTCCGAAAAGGTACCTGTTGTCGCGCCACATGAAGTCCCACTCGGAGGAGCGGCCGCACAAGTGCAGTGTGTGCGAGCGCGGCTTCAAGACGCTCGCCTCGCTCCAGAACCACGTCAACACTCACACGGGCACCAAGCCGCATCGCTGCAAGTTCTGCGACAGCGCTTTCACCACTTCAGGTGAGCTCGTAAGGCATGTTCGGTACAGGCATACCCACGAGAAACCACATAAATGTACCGAGTGCGAATACTCGAGCGTGGAATTGAGTAAATTGAAGCGTCACATGCGCAGCCACACGGGCGAACGACCCTATCAGTGCCCTCACTGCACGTACGCCAGTCCGGACACATTCAAGCTCAAACGACATCTCCGGATACACACGGGTGAGAAACCGTACGAGTGCGACATATGCCACGCTCGCTTCACCCAGTCCAACAGTCTCAAGGCTCACAAACTCATTCACAGCGTCGGCGATAAGCCCGTGTTCCACTGCGAGCTGTGCCCGACGACGTGCGGTCGCAAGACGGACCTGCGCATCCACGTCCAGAAGCTGCACACGTCCGACAAGCCGCTCAAATGCCGTCGGTGCGGCAAGTCATTCCCCGACCGTTACACCTACAAGATCCACAACAAGTCGCACGAGGGCGAGAAGTGCTTCAAGTGCGACCTCTGTCCGTACGCGTCCATCTCCCAGCGCCACCTCGAGTCGCATATGCTTATACACACCGACCAGAAGCCGTACCAGTGTGACCAGTGCGATCAGTCATTTCGCCAGAAGCAGCTTCTGCGACGCCATCAGAATCTCTATCACAACCCGAACTACGTACCGCCGCCGCCGCGGGAGAAGACCCACGAGTGTCCGGAGTGTGGCCGAGCGTTCCGGCACAAGGGCAACCTCATCCGGCACATGGCCGTCCATGACCCCGAGTCGTCGGCTCAGGAGAAGGCGCTGGCGCTGAAGCTCGGCAGGCAGAAGAAGATCCAGATCATCGACGGACAACAGGTGGAGGTGATGGCGGGTGACGACGACGAAGACGAGGATGAGGACACGGACGCGGAGATGATGGCGGTGGAGGGGCAGGACGGAGAGCAGTATGTCGTGCTCGAGGTGATACAGCTGCAGGAGGGGGAGGACGGTGAACAGCAGCTGGCGGTGATGACCGGCGACGGGCTCGAGGGGGTCACGCTCGGTGACAGCGATGACGAGATGCTGTCAGGTCAGCACATCACGCCCGATTCACACCTTACAGACGATGAAGATGTCATACAGACAATTAGAAACAGCAGAAAGTTATCGAGAAAAGATGCAATCGCTTTTAGGAAACGAATTGAAACTGAGAAAGACATGCAGACTTGTTTTGGATTCGACGACGAAGAAGGggaagaggaagaggaggatCTGGAAGAAGAGCAGGAAGAAGAGGATGTGGATGACGAAGCAGCCTCCAAGTCGACTATCCAACTTTTAGAATCGATTCAAGAATAA
Protein Sequence: MSDQKPSTSTVATVDMATVSGTTMSAVEIKMEGHENPETISDIQNYLATFNKEIQVGDQSIQHVTVQQVVTEGQEDEGGTYFVDQSGHYYYQASSDQQPVMTVVSGIADPTEEGEGDSEPTYVAMQPQDEQMEDQLAMEASDEGEIVTGDPTGQMILNSNDAYQTVTIVPSDTNPGEVSYVLIVQQPDDKDGDKMDDQDLTVYDFDEGEEVNNPVESENEDDKTKIIKIIPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYRHTHEKPHKCTECEYSSVELSKLKRHMRSHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSVGDKPVFHCELCPTTCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYTYKIHNKSHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPYQCDQCDQSFRQKQLLRRHQNLYHNPNYVPPPPREKTHECPECGRAFRHKGNLIRHMAVHDPESSAQEKALALKLGRQKKIQIIDGQQVEVMAGDDDEDEDEDTDAEMMAVEGQDGEQYVVLEVIQLQEGEDGEQQLAVMTGDGLEGVTLGDSDDEMLSGQHITPDSHLTDDEDVIQTIRNSRKLSRKDAIAFRKRIETEKDMQTCFGFDDEEGEEEEEDLEEEQEEEDVDDEAASKSTIQLLESIQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995620;
90% Identity: iTF_00242487;
80% Identity: -