Bris004286.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachyptera risi
Gene Symbol
V-UBI
Assembly
GCA_964007535.1
Location
OZ023326.1:51287914-51315567[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0014 0.13 13.9 0.1 1 23 465 487 465 487 0.96
2 14 0.018 1.6 10.4 2.0 1 23 520 544 520 544 0.97
3 14 3.4e-06 0.0003 22.1 0.3 2 23 551 573 550 573 0.96
4 14 0.0038 0.33 12.6 0.4 3 23 581 601 579 601 0.97
5 14 0.00067 0.059 14.9 0.2 1 23 607 629 607 629 0.98
6 14 4.4e-06 0.00039 21.8 2.6 1 23 635 657 635 657 0.98
7 14 1.7 1.5e+02 4.2 0.1 3 23 669 691 668 691 0.95
8 14 1.2e-06 0.00011 23.5 0.8 1 23 707 729 707 729 0.99
9 14 1.2e-05 0.0011 20.4 2.1 1 23 735 757 735 757 0.97
10 14 4.4e-05 0.0039 18.6 1.8 1 23 763 785 763 785 0.98
11 14 0.095 8.4 8.1 1.2 1 23 791 813 791 813 0.94
12 14 0.00022 0.019 16.4 2.8 1 20 819 838 819 841 0.95
13 14 1.6e-07 1.4e-05 26.3 0.2 1 23 847 869 847 869 0.98
14 14 2.2e-05 0.0019 19.6 0.8 1 23 875 897 875 897 0.96

Sequence Information

Coding Sequence
ATGAAACTTGTGCTGCGGAACGTAACTGGAGAAACAATAACTCTAGAGGTAAATCAAGGAGACACATTTCGGGATCTGAAGGCTAGGATCTTTGAACAGTCCGGCATCCAGCTTGACCTAGAGCAACTTAATTATAAAGGCAAAAGAATAACTGATGATCAAATCATCACCAAGTATTTTTTTGAAGGTCAAAACTCCAAGTCTAATAAATATCTACCAGACAGTACTTGTGATGAAACCGAGGTTACtttggaagaagaaggaaggcCGCCGTCAGAGGAATGCAGTGTTGCAACATTAGAGGAATGTAGTGTCCCTGGTTGCAACAACACAGTTACTCTGTGCCCAGGAAAAACATTCTTCAACTTTCCAACTGATGATGAAAGGTGTCAGCACTGGTTATTAGTATGTAAGCGTCTTGATTTGCTCGACAAGCCAAGTGCATATGTAAGTCAGTATCACGCAATATGTCAGGATCACTTCTTAGTCGATCAATTTGTGGACGATCTACGTGTGAAGCTGAAACCTGGTGCTTTACCATCGATAATCGACGTTGACTATCTTGGCGACGAGGGTATTCCCGAGGGCGATGAAATCGTTGCCGAAGGCACTCGATGTAACATAACTGTCAAAGAGGAGCCATTCTACGAGTCTGACAGCGACGATGCAGATCAAGTGTCTGATGGTGATGACGATTTGCTAGACACTGACGATGGGCAGTCGGGACTACTATGCCGCCTCTGCGCCACCACCATCACAGAGACTGTGGCATTCATCTACAGTGAGGCTGGCAAGGAGATGAACATTGCACAGAAAATAAACATGGCGTTGCCGGTTGCTGTCCGAAGTGTGGATCCATTGCCAAAACAGCTTTGTGTACCATGCCTGGAGAAAGTTAACTTATGCCACGAGTTTTCCGAACAGTGTATTCAAGCGGAGAGAAAGCTGCGAAGGCTCCATCGACGGAGAATCTTCAAATCAACCATTGGTCCAGCAATGCCTATGGAGAAGGACCCTGAAGCTGATAAAGACATGGAAACCACTGATGAGGCAAAAGTTACTTGTGGAGAAAATAAGGAAAATGATGACGCTTACTGTTGCCCACTATGCCACGTCGGTGAAATGGCTATCAAAGAAGACAATGATGCAGATAACATGTACGTGGAAGTAAGAAAGATGGATGGCATTATGGCTAATATGTACGGTGAAGACAGTGAAAGTAGCTCTTATGAAGATAATATTGATGAGGAAGAAATTTTTGGTTTGCCAAACGACACCATCTCCCAATATTATAGCACGAAAGAAAATCGAACTTGTCGCTTCTGTTCTGAAACGTTCGACACTGTTGAGCAATGTTTGGGTCACGGTAAGACTCACACAGACACTGAAATCTTTCCTTGCAATCTTTGTGATCTGTCTTTCTATACTGAGGCTGCTTACGAGAAACATTGGGACATTCATCGACCTCTCGATGCCAAGATAACATGTCGAACATGTGGCCGGTTAATCAGCAAGCACAACATGCAGGATCATGTGTGCGGTAATACCCTCAAAGCATTCAAGTGCACGAAGAGCAACTGTGGAAAGTTTTTCCGCTCAGAAGAACGCCTCGCTTTTCATCAGCGAGTACACGACGGTGCTGATCCTGTTGTCTGTGGCTATTGCAACAAATCATTCAGTCGTGAGACCAACTTGTTTGACCATGTCCGAATGGTGCACAAAGGGGAGAAACCGTATGGATGTAACACGTGTGGAAAGTCATTCCAGTTAAAGGGGAGGCTTCTTGCTCATAGCCGCGTTCACACAGGTGAACGGCCCTTCGAGTGTGACATCTGTGGTGGCCGCTTCTACAACAATGCCACATTGAAAGGTCATCGAGTTACTCACATGGAAATGAAGCCGTTTCAGTGCGATAAGTGCGGACGATGTTTTGCTCGGAAAGCGCTGTTCAATCAACATCAGTTGGTGCACCTAAGTGATGACATACCGAAACAGCAGAGAGCATGTAAGCTGTGTGGGGACATTGTGTTTGGTTCTTACGCAAAGCTTCTGGAACATAGGAAGATGAACCACCCGGGTGTTGAAATCAAAGAGGAGGCAAACGTGTCTTCAAAACCATTCCGTTGTGAGGAGTGTGGTAAATCGTTTGCATATCGCGTGACCTTGGTTACGCACCTGCGGAAGCATACGGGAGAGCTGCCGTTTGATTGCCAGTACTGCGAGAAACGGTTCTCACAGAAACGTTCGTTGATTCTGCATGAAagaacacatactgGTGAGAAGCCATTCGAGTGTGAGGTATGCAAGAAGCGTTTTGCTCAAAGTGCACATATGTACTCCCACATCCGCCTTCATACGGGCGAGAAACCATACGCTTGTGATCACTGCGATGCCACTTTTCGGCTAAAAGACGTTCGTGACTCGCATGTACGTAAGCACACCGGCGAGCGGCCTTACAAGTGCGAAGTCTGTGAGAAAACATTCCGTACATCCCACTCTTACTACCAGCATATGTGGATCCACCAGGGGAAGAAGCCGTACCCCTGTGGTTACTGCGGCAAAGCTTTCAGGCGCTCAAACGGACTCAAGATACACATCAGGATACACACTGGAGAGAAACCGCATGCATGCGAAGTGTGCGGTCGCGGATTTGCTCAGAAACAAGACATGAAGAAGCACATGAATCTACATCTCAACGGTAAACTATAG
Protein Sequence
MKLVLRNVTGETITLEVNQGDTFRDLKARIFEQSGIQLDLEQLNYKGKRITDDQIITKYFFEGQNSKSNKYLPDSTCDETEVTLEEEGRPPSEECSVATLEECSVPGCNNTVTLCPGKTFFNFPTDDERCQHWLLVCKRLDLLDKPSAYVSQYHAICQDHFLVDQFVDDLRVKLKPGALPSIIDVDYLGDEGIPEGDEIVAEGTRCNITVKEEPFYESDSDDADQVSDGDDDLLDTDDGQSGLLCRLCATTITETVAFIYSEAGKEMNIAQKINMALPVAVRSVDPLPKQLCVPCLEKVNLCHEFSEQCIQAERKLRRLHRRRIFKSTIGPAMPMEKDPEADKDMETTDEAKVTCGENKENDDAYCCPLCHVGEMAIKEDNDADNMYVEVRKMDGIMANMYGEDSESSSYEDNIDEEEIFGLPNDTISQYYSTKENRTCRFCSETFDTVEQCLGHGKTHTDTEIFPCNLCDLSFYTEAAYEKHWDIHRPLDAKITCRTCGRLISKHNMQDHVCGNTLKAFKCTKSNCGKFFRSEERLAFHQRVHDGADPVVCGYCNKSFSRETNLFDHVRMVHKGEKPYGCNTCGKSFQLKGRLLAHSRVHTGERPFECDICGGRFYNNATLKGHRVTHMEMKPFQCDKCGRCFARKALFNQHQLVHLSDDIPKQQRACKLCGDIVFGSYAKLLEHRKMNHPGVEIKEEANVSSKPFRCEECGKSFAYRVTLVTHLRKHTGELPFDCQYCEKRFSQKRSLILHERTHTGEKPFECEVCKKRFAQSAHMYSHIRLHTGEKPYACDHCDATFRLKDVRDSHVRKHTGERPYKCEVCEKTFRTSHSYYQHMWIHQGKKPYPCGYCGKAFRRSNGLKIHIRIHTGEKPHACEVCGRGFAQKQDMKKHMNLHLNGKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00243265; iTF_00242272; iTF_00242465;
90% Identity
iTF_00243265; iTF_00242272; iTF_00242465;
80% Identity
iTF_00243265;