Bris036107.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023339.1:3242481-3243892[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.28 1.4e+03 0.1 0.1 10 31 19 40 11 43 0.81 2 9 0.012 59 4.5 0.0 7 31 53 77 49 84 0.85 3 9 0.013 63 4.4 0.0 7 31 164 188 160 191 0.84 4 9 0.016 78 4.1 0.0 7 31 201 225 197 228 0.85 5 9 0.029 1.4e+02 3.2 0.0 7 30 238 261 234 266 0.85 6 9 0.0093 45 4.8 0.0 6 31 274 299 271 306 0.86 7 9 0.013 63 4.4 0.0 7 31 349 373 345 376 0.84 8 9 0.0032 16 6.3 0.0 6 31 385 410 382 413 0.88 9 9 0.034 1.7e+02 3.0 0.0 7 31 423 447 419 450 0.84
Sequence Information
- Coding Sequence
- ATGGACCCGTTCAGAGATGAAACTACTCTTGCAAAGCACAACGGACGGAAGCTGATTGTTCGAGGCAGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGTTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGCTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTCGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGGCGCATCATAAGTTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTCGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGCTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGCTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGGCGCATCACAAGTTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGAGCGCTGCATCAGAAGCTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTCAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGCTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTCGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGTATCACAAGTTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGCTGCCAACTTGACGCCGCGCCGCAACAACCGCACACGCCTTTAGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGCTGCATCACAAGCTGCCAACTTGACGCCGCGCCGCTACAACTGCACTCGCCTTTCGGTTGGCAACTTGTGGTGCACTGCCGCACCGCTGGCAGTCGAGCAGGCCAGGGGCGGCGCATCACATGA
- Protein Sequence
- MDPFRDETTLAKHNGRKLIVRGSWQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPLGWQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPLGRQLVVHCRTAGSRAGQGRRIISCQLDAAPLQLHSPLGRQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPLGWQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPLGWQLVVHCRTAGSRAGQGRRITSCQLDAAPLQLHSPLGWQLVVHCRTAGSRAGQERCIRSCQLDAAPLQLHSPSGWQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPLGRQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPLGWQLVVHCRTAGSRAGQGRCITSCQLDAAPQQPHTPLGWQLVVHCRTAGSRAGQGRCITSCQLDAAPLQLHSPFGWQLVVHCRTAGSRAGQGRRIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -