Bris025775.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_964007535.1
- Location
- OZ023334.1:3988069-4006486[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-108 1.7e-103 347.2 29.4 1 300 80 369 80 369 0.91 2 2 0.0043 1.7e+02 2.4 3.4 120 172 367 419 366 425 0.92
Sequence Information
- Coding Sequence
- ATGTGTGTGAGTGAAGGTAAACAACATACGTCATCACGTGTAGCCGAAGATGTTCCCCGGCAGGTTGACTTGTTGACTCTAAAAGGTGTTCCATCTCCGTATTTACCGCATTCCTCCAATCTGCTCATGACGGCTGTTTGTGTACTTTTCAGGACATACTGTAAGATAGTTGTGTTTATAAGCTACTGTCAGCTACTTGGTCTTGTACAAATATCCAGCCTTTTGTCGGTCATTCAGGCGGAGGCTCGACTGGCGGCAAGAAGGCAGGCGCGGGCCGAGGCGAGAGAGATACGCATGAGAGAGCTGGAGAGGCAACAGAAGGAGATAGAAGAGAATGCCGACAGAGTCTACGACATGTATACAGACCCTGTGAGCCGCACGACGAGGGTGGCGGCCACGGCGGTTGCCAGCCCCCGCGCAGCTGCGACACTCGTCAACAACAGCTTCCAGTCGAGCCGGCGCAGCTCCGAGGACTCGCTCGAGGAGACGGGGAGCATACGCGACGTCAGGCACGAGCTGaaggaggtggaggagaagttccGCAAGGCCATGATCCAGAACGCTCAGCTGGACAACGAGAAGGCTTCCCTCAGCTACCAGGTGGAGCTGTTCAAGGACCGGATGGAGGACCTCGAGGAGTCCCACAGCCAGCTGCAGCGCGAGCACAAGGAGAAGTGCCGCGCGCACGAGCAGCTGAAGCGGACGGCGGGCAAGCTGAGCGAGGACGCAGACTGCTACAAGCTGCAGCTGGCCGAGCGGGACGAGATGATCGCGCACCACGGCCTGCAGATCGTGGGCGGGGAGGAGGGGGACGCCAGGAGGGTACTGGTCACGGTGGAGCACGCGCAGCTGCTGCAGGACGTCGGCGAGGGATCGCTCGACGTGCGGTTGCGCCGTCTGCGCGAGGAGCGTAACGACCTGACGGACGAGGTGCGGCGGCTGCAGTTGGCGCTGGAGGAGGGTCGGAGCAGGTCGGAGCAGAACCACGTGGTCGGAGCGGGACCGACCGTCAACGGCACCGACTCGGACGAGGCTCAGCGCGAGACTAACAAGCTGCTGGCCGACTACAAGTTCAAGCTGCAGAAGGCGGAGCAGGACGTGTCCACGCTGCAGGCCAACGTGGCGCGCCTCGAGAGCCAGGTGGTGCGCTACAAGGGCGCCTCCGAGTCCTCCGAGAAGGTCGAGGACGAGCTCAAGGTCGAACGCAGGAAGCTGCAGCGAGAGCTCCGCGAGGCGCAGGTCCGAGTCGAGGAGTTGGAGACGACCAACTCGCACTACCAGCGGCGGTTCGACAAGCTGAAGAACGCCAAGTCGACGCTGCTGAAGGAGCTGTGA
- Protein Sequence
- MCVSEGKQHTSSRVAEDVPRQVDLLTLKGVPSPYLPHSSNLLMTAVCVLFRTYCKIVVFISYCQLLGLVQISSLLSVIQAEARLAARRQARAEAREIRMRELERQQKEIEENADRVYDMYTDPVSRTTRVAATAVASPRAAATLVNNSFQSSRRSSEDSLEETGSIRDVRHELKEVEEKFRKAMIQNAQLDNEKASLSYQVELFKDRMEDLEESHSQLQREHKEKCRAHEQLKRTAGKLSEDADCYKLQLAERDEMIAHHGLQIVGGEEGDARRVLVTVEHAQLLQDVGEGSLDVRLRRLREERNDLTDEVRRLQLALEEGRSRSEQNHVVGAGPTVNGTDSDEAQRETNKLLADYKFKLQKAEQDVSTLQANVARLESQVVRYKGASESSEKVEDELKVERRKLQRELREAQVRVEELETTNSHYQRRFDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -