Bris015868.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- ttk_1
- Assembly
- GCA_964007535.1
- Location
- OZ023330.1:11691703-11709226[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.34 2.2e+02 2.7 0.0 28 36 246 255 245 262 0.82 2 4 2.6e-11 1.7e-08 35.1 0.1 3 42 272 310 270 313 0.90 3 4 2.3 1.6e+03 0.0 0.0 21 40 347 366 334 371 0.77 4 4 3.5e-11 2.3e-08 34.7 0.1 4 38 391 425 388 429 0.90
Sequence Information
- Coding Sequence
- ATGAATTCTAAACCTCAACACTATTGTCTTCAGTGGAATAATTACCAGACTCATGTTATTGAACTATTTGTTCAGTTGCTTGAAGCAAATAGCTTGGTCGATGTGACTCTAAGTGtcgaaaataaaacaatatatgCGCATCGAATCATTCTCTCTGCGTGCAGTTCATACTTTCAGGAAATGTTCACAAACACCGAAGACTCGCATCCTATAGTCATACTGAGTGATATGAGATATGACGATGTTAAAGCAGTAATTGAATTCATCTACCGCGGTGAATTGAGTGTAAGTGCGGAGCGAGTTGCCTCTGTTCTACAAGTAGCCAAGGAATTGAAAGTCAGGGGACTTATGGAGGTCAGTAGTCACGTTCTAGAAATAGACCGTGAATCATCTTGTCTTTCCGACACTGTCGTTGATTGTTCAAACGTACTCGAGGTTCCATCGATCGAGCACTCTTTGAACGAAGACGTAAACGAGCTTGAGTTGGAAGAAGTTGAAATGGAGACAGATTGCTTCATTGGTGATGCCGAGGATGTCCTCTGTAAAGCAGATTCAAATCCGTTACTTGTCgaAGTGGGACGCAAAATTGTCAACAAAAGAATCCTCGgtgaagaaattaaaaaaacgcGTAGAAGAGATGGTAGTAAGAAGAATTATAGTGAAGGGGTGATGAAAGAAGCATTAGACGATCTCCGAGCGGGCCGGAGCTTACTAGAAACGTCGTTATCTCGTCATATACCTCGTTCCACGCTGTACTTCCGTGCGAGGTCCCAAGGTGTTCCCATGGCCATCACACGCCAAGAACATTCTCAGGAGACGATCTACGCTGCTGTACAAGCTGTTGCAGGTGGTGCTAGCTTACAGCAGGCAGCACAGCAATACAAGATACCTAAAACTGTTCTGTGGCGTCGTATGCGTAAGGAGGAAATGAAAAACACGTCTGGACGATCTGGTACTTACAACAAAAGCAAACCTCGTTACACTGCGGAAAAAAGACTGGCAGCTGTGAAAGCATTAGAAACTGGTGACAATCTCAGTCGAGTATCGGAACAGTTTCAAATACCAGTGACAACATTGTTTCGTGACAAGTCGCGCTTGGTCGAGGCGGGTCGCTTGCCGTGGACTTGTTTACGTAAACGCAACCTGAGTGGTGATAGTTTTAAGCAGCATCGTTTAGCAGAGGCAGTGGCTGCGTGCAAAAATGGGAAAATGTCGCAAGCTACTGCATCGATCACATACAAGGTTCCAAAAACGACCATTTGGCGTCAGATGCAGAAGGGTATAAAAGATGACCCTGGATATTATGATGCTCATTGTGAAGAATTTCCTGCTAGTATTGAATATCAAGAGCAATTAATCGAGTCTGAAGAAGTACACGAATGTGTTGGGCAGCATCAACAGTCGGAATATTCTTTGGTTGAGATTGACAATTCAGAAATACCTGTCACTTATATTGGTGAAGATGCAGACTTTTCAGAAGCATCTCTGATCATCTTAAATGGGAGTGATGCTCAAACAATAGCACTGCCAGAACATGGAGAGCAGATAGTAGTAGATTCTGAAGGAAATGAAGTATTGGATTCAAGTGATACGTAA
- Protein Sequence
- MNSKPQHYCLQWNNYQTHVIELFVQLLEANSLVDVTLSVENKTIYAHRIILSACSSYFQEMFTNTEDSHPIVILSDMRYDDVKAVIEFIYRGELSVSAERVASVLQVAKELKVRGLMEVSSHVLEIDRESSCLSDTVVDCSNVLEVPSIEHSLNEDVNELELEEVEMETDCFIGDAEDVLCKADSNPLLVEVGRKIVNKRILGEEIKKTRRRDGSKKNYSEGVMKEALDDLRAGRSLLETSLSRHIPRSTLYFRARSQGVPMAITRQEHSQETIYAAVQAVAGGASLQQAAQQYKIPKTVLWRRMRKEEMKNTSGRSGTYNKSKPRYTAEKRLAAVKALETGDNLSRVSEQFQIPVTTLFRDKSRLVEAGRLPWTCLRKRNLSGDSFKQHRLAEAVAACKNGKMSQATASITYKVPKTTIWRQMQKGIKDDPGYYDAHCEEFPASIEYQEQLIESEEVHECVGQHQQSEYSLVEIDNSEIPVTYIGEDADFSEASLIILNGSDAQTIALPEHGEQIVVDSEGNEVLDSSDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00242085;
- 90% Identity
- iTF_00242085;
- 80% Identity
- iTF_00243385;