Bris024100.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- bab2
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:10551518-10564659[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 1.2e-08 35.6 0.0 1 38 328 366 328 371 0.90 2 4 3.7e-12 2.4e-09 37.8 0.1 1 39 382 420 382 423 0.95 3 4 9.6e-19 6.3e-16 58.9 0.0 1 45 437 482 437 482 0.97 4 4 7e-17 4.7e-14 52.9 0.1 2 43 490 532 489 533 0.96
Sequence Information
- Coding Sequence
- ATGGCCAGCCAGCATTATTGTCTGCGTTGGAACAACTACCAGTCGAACATGACGTCTGTATTTCATCATCTTTTGCGCACGGAAGCGTTTGTTGACGTCACTCTGGCCTGTAACGATATGTCGCTCAAGGCTCACAAGGTAGTGCTGTCTGCGTGCTCGTCGTACTTCCAGAAGCTGCTACTGGAGAACCCGTGCAAGCACCCGACCATCATCATGCCGCAAGACGTCTGCTTCAGCGACCTCAAGTTCATCATCGAGTTTGTCTACCGCGGCGAGATCGACGTCTCCCAGGCAGAACTTCAGTCGCTGCTGAAAACGGCCGATCAGCTGAAAATCAAGGGCCTGTGCGAGACGCGGGGCGACGCCGGGAGCGACCTTGACAGCCACCGGAGGTCGTTCACCAAGCTGCGCCGGCTGTCTGGCTCCAAGCGGCCGCGGCAGGCTGACCTGGCCCGCCGCGAGGTGGACATCGACCTGACGGACCTCGAGGCCCCCGTGGTCGTGCTGGAGACGCGCGGCATGCACGGCGTCAAGAGGAACACGGTGGGCAACGGTCCTCCACCTATCACCACTCCCCATTTGGTCGCCCTTGACTCCCACTCGACCACTCACAGTTCGACCAATGACAACTCTGACGTTGACATTCTGCCCGAGGCCCAGCCTCCGGCGCCGACCGCTACCCTGGTGGAGGTGGAGGACTTGGAGCTGGGCGAGTGCGAGAGGACGGCAGCGTCACAAGAGAACGTGGAACAAGAGATGGAGAACAACATCGTCAAGGTCAAGTTCGAGACACTGCGAGCGATGGAACAAGACGCGATCGACGACGAACACGACATGGAGGATAGGgaagacgaagacgaagatGATCACGCCATGCACACGATGATGATCACTCCGGAGCTCCTGGGGCTCATTCCCACTTCATCTCTACATTCCGACATCTGCAGCGATCCGGGCAAGTCCGGCATCCCGAAGTCGTGGACGCAGGAGGACATGGAGCTGGCACTGGACGCGCTGCGTAACCACGACATGAGCCTGACGAAGGCGTCCGCGACCTACGGGATCCCGTCCACGACCCTGTGGCAGCGCGCCCACCGGCTGGGGATCAACACGCCCAAGAAGGAGGGGCTGTCCAAGTCGTGGACCGAGGACATCCTCAACACCGCTCTCCAGGCGCTCCGGACCGGGACCATCTCCGCGAACAAGGCCAGCAAAGCGTACGGAATCCCAAGCAGCACGTTGTACAAGATAGCGCGACGAGAGGGCATCCGGCTGGCAGCTCCCTTCAACGCGGCGCCCACCACCTGGAGCCCGGACGACCTTGAACGGGCGCTGGAGGCAATACGCTCCGGAGCCACGTCCGTTCAACGGGCTGCCACGGAGTTTGGTATCCCCACTGGAACGCTCTACGGTCGGTGTAAAAGAGAAGGCATCGAGCTGTCCCGCAGCAACCCGACACCGTGGTCAGAGGGGGCGATGGGCGAGGCCCTGGAGGCCGTACGGATCGGCCACATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCGTACTCGTCGCTCTACGGCAGATTCAAGAGAGGGAAATACGAGGCCGAAGGTCACCCGCCCCCCGACGATGTGCTCTCCAACGCGTCGCCACCCCCCTCCGCCCCCCAGATCATGGTCCTCCAGTACCAGCAACACCCCCAGctgcagcaacaacaacaacaacaacaagtgcTGTATCAGCAGAGCTGA
- Protein Sequence
- MASQHYCLRWNNYQSNMTSVFHHLLRTEAFVDVTLACNDMSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCETRGDAGSDLDSHRRSFTKLRRLSGSKRPRQADLARREVDIDLTDLEAPVVVLETRGMHGVKRNTVGNGPPPITTPHLVALDSHSTTHSSTNDNSDVDILPEAQPPAPTATLVEVEDLELGECERTAASQENVEQEMENNIVKVKFETLRAMEQDAIDDEHDMEDREDEDEDDHAMHTMMITPELLGLIPTSSLHSDICSDPGKSGIPKSWTQEDMELALDALRNHDMSLTKASATYGIPSTTLWQRAHRLGINTPKKEGLSKSWTEDILNTALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALEAIRSGATSVQRAATEFGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRIGHMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHPPPDDVLSNASPPPSAPQIMVLQYQQHPQLQQQQQQQQVLYQQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00242083; iTF_00242373; iTF_00243414;
- 90% Identity
- iTF_00242373;
- 80% Identity
- iTF_00243414;