Bput016554.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015462.1:54518502-54528475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00082 0.073 14.5 0.8 2 23 286 308 285 308 0.97 2 15 0.019 1.7 10.2 0.5 1 23 312 334 312 334 0.93 3 15 0.00012 0.011 17.1 1.3 1 23 352 374 352 375 0.93 4 15 0.0063 0.56 11.7 4.0 1 23 381 403 381 403 0.98 5 15 4.1e-06 0.00036 21.7 3.3 1 23 409 431 409 431 0.96 6 15 2.8e-05 0.0025 19.1 2.0 3 23 442 462 440 462 0.97 7 15 0.0016 0.14 13.5 2.8 1 23 468 490 468 490 0.96 8 15 1.2e-06 0.0001 23.4 1.5 1 23 496 518 496 518 0.99 9 15 0.00077 0.069 14.6 0.5 1 23 524 546 524 546 0.99 10 15 9.6e-05 0.0085 17.4 0.6 1 23 569 591 569 591 0.99 11 15 5.6e-06 0.0005 21.3 0.6 1 23 597 620 597 620 0.97 12 15 0.0031 0.27 12.7 2.1 1 23 654 676 654 676 0.98 13 15 5.3e-05 0.0047 18.2 3.5 1 23 682 704 682 704 0.98 14 15 4.4e-06 0.00039 21.6 1.2 1 23 710 732 710 732 0.98 15 15 3.6e-05 0.0032 18.8 1.2 1 23 738 760 738 760 0.98
Sequence Information
- Coding Sequence
- ATGGCTACCGAGGCAGACGGTTCTTTGGAAATAGCGGAAGATGATTCTATGGATCCATCGTATACACTCTCAATGGATCCAGCTAGTCTCGGACTCGTCATGGAAGAAGTGCACGCCGGTACGGAGATCCCGTGGGAAGAAGAAATCGGAATAATAACTGACGAGGCAATTTGTATCGAGAATCTGTTCTGTCGTGTCTGTGCCGAACAAGCTGCCGAGTTGATACCAATATTTGAAGAGCAAGGAATGGAGCTTAGTCTTGCTGATAAGATACGGTGGCATCTACCGATCACAATCTCGGAAGACGATAAGCTACCCGTGAAGCTGTGTCCTGCGTGCGTTACTCGACTCAACTCGTGTCACGACCTCGCCAACTTGTGCCTGGAGTCGGAGGCCAAGCTGGAAAGACTGTTCAATATAGACGATGCAACCGAGTTCAACGAGTCAGCAAACGAGCAAAAGGTAACGGATTCTAAAAGCCCCTCAGATCATCTAATAGACGGAATGAAACAATTCAGGAAGGAGAGAATGCCGGACAATAACTACAATAATCTGTCTTCTGGCGACAATTCTAATGAAGACTTCGAGACCGTATACCTTGAAGATCCGTTAGACGACGATTTGAAAGGTCAGGTGTTGGATGTCATCATAGAACCCGTAGGCGTGGAATCGTTACCTGCCGGACAGTGGAAAACAGCTAATTTGCGTGTGAAGATGCCAAAAGATTTTGCAGATTGTGACACTACCTTGAAATCGCAGATTGTTGGAGCGATCCAAGACATAATGATCGAAGAAGATCAATCGGCAAAAACGAAAAAAAACTCGTTGTTCACCAGAAGCAACAATAAAGAATGGAAATGTGACATTTGTTCGCACGTTGCGCCGAGAAAGTCGTCACTTCTAGTCCACCAAAGACGGACGCACGCCAAATCTTTCGCTTGCTCCTATTGTTATAAAACGTTTTCCAACGGCGTCGCTAGGAGACAACACGAGCTCGTCCATAGACCGGAAACGATAGTCGACGACGACGACTCGAATCAGGCCAATCCTTCTTTCGTTTGCGAGATTTGCGAGGTGTCTTTCAGCAGAAAGAAGCAGCTTACTGATCACAACCTGGAACACCACACCGACGTGAAACGGTTCAAGTGTAATAAATGCGACAAGCACTACGGATCTCTCACCAGCCTCGACATCCATCACGCGACGCACCTCTCGGAAACCGCGTACTTGTGCGACTTGTGCGGGAAGAGTTTCAAACACGTCAGCAATTTGCGCAGTCACAAACGTTCGCATCTGGTCGACGAGAAGAAGAATAGCCAGATTTGTGACGTATGTACGAAGGGTTTCCGATCCCGGTTTCACTTGAAAGAACATATGAATGTGCATCAAAATAGAACGCCGTACTCGTGTGATATATGTTCCAAGAAGTTCCATAAAAAAATACAGCTCCGCCAACACGGCTCGGTGCACCTGGGCCTCCAGCCGTACAAGTGCAACATCTGCGGGATCCGGTTCAATCGCCGCGGCAACATGACGCAGCACCTGAAGCGGCACGAGCGCCAGCTGAAGTACACGTGCAAGGTGTGCTCGGCCGGGTTCGACCGTCTCGGCACGCTGCTGCAGCACCGCAAGTCGCACACCAAGGACGAGCTGGACGACGCCATCTACCGACAGGTGGCGGCAGACGATTCCGTCCAGGAGGCCTACAAGTGCGAGATATGCAACAAGCTGCTCGCCAAGAAGGAGACGCTCATGCTGCATATGAGGTCGCACTCGGGCGAGAAGTTGTTCGCTTGCGAGGTTTGTGGCAAGAAGCTCTCCAATAAGGGTTCGCTGACATACCATATGCGTTCGTATCATACAGGAGAACGTCCGTACGCGTGCCAGTATTGCACGGACGCGTTCCTGACGCGCGAGGCGTGTTCGGTCCACGAACGTATCCACACGGGCGAGCGTCCGTACTTCTGCACCGTCTGCAAGATGGGCTTCCGTTGCTCGAGCAACCTGGCGCAACACGTTCGCGTGCATTCCAACGTCCGCAATCACCAGTGCGAGCACTGCGAGAAGTCGTTCCTGCGCAAGGGGGCGCTCACCGTGCACCTGCGCACGCACACGGGCGAGAGACCATACATATGTGACCAGTGTGGGCGTGGTTTCACGCAGAAGAATGACATGTTGAAACATCGAAGAACGCATACGCTAGAGAGACCTTTCTCGTGTAACATCTGCGGCATGATGTTCAGCCAGAAGCGCGAGGTAGCGAAACATCACATGATTCACATGCAACAGGTCGAAGGTCAGACCGAGGAAATGGTGGAGCCTCACACCGTTGTCATAACGACGAGCGAGGACCAGGACCACCTGATCCACAGCTTCTCCGCCGAGGTCATCGACGGCACGCAGACCCTGTTGAACGTGTTCAATCAGTTTTAG
- Protein Sequence
- MATEADGSLEIAEDDSMDPSYTLSMDPASLGLVMEEVHAGTEIPWEEEIGIITDEAICIENLFCRVCAEQAAELIPIFEEQGMELSLADKIRWHLPITISEDDKLPVKLCPACVTRLNSCHDLANLCLESEAKLERLFNIDDATEFNESANEQKVTDSKSPSDHLIDGMKQFRKERMPDNNYNNLSSGDNSNEDFETVYLEDPLDDDLKGQVLDVIIEPVGVESLPAGQWKTANLRVKMPKDFADCDTTLKSQIVGAIQDIMIEEDQSAKTKKNSLFTRSNNKEWKCDICSHVAPRKSSLLVHQRRTHAKSFACSYCYKTFSNGVARRQHELVHRPETIVDDDDSNQANPSFVCEICEVSFSRKKQLTDHNLEHHTDVKRFKCNKCDKHYGSLTSLDIHHATHLSETAYLCDLCGKSFKHVSNLRSHKRSHLVDEKKNSQICDVCTKGFRSRFHLKEHMNVHQNRTPYSCDICSKKFHKKIQLRQHGSVHLGLQPYKCNICGIRFNRRGNMTQHLKRHERQLKYTCKVCSAGFDRLGTLLQHRKSHTKDELDDAIYRQVAADDSVQEAYKCEICNKLLAKKETLMLHMRSHSGEKLFACEVCGKKLSNKGSLTYHMRSYHTGERPYACQYCTDAFLTREACSVHERIHTGERPYFCTVCKMGFRCSSNLAQHVRVHSNVRNHQCEHCEKSFLRKGALTVHLRTHTGERPYICDQCGRGFTQKNDMLKHRRTHTLERPFSCNICGMMFSQKREVAKHHMIHMQQVEGQTEEMVEPHTVVITTSEDQDHLIHSFSAEVIDGTQTLLNVFNQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243488;
- 90% Identity
- iTF_00243488;
- 80% Identity
- -