Bput022736.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_907164805.1
- Location
- OU015471.1:19324426-19332110[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-101 7.7e-97 325.1 28.1 1 300 14 298 14 298 0.89 2 2 0.02 6.9e+02 0.3 0.1 120 163 296 339 296 341 0.83
Sequence Information
- Coding Sequence
- ATGGACGTTGGGGCTTCGACGTTTAAAAGTGTAGTGTTGGCGGAAGCTCGACTGGCCGCCAGGAGGCAGGCGCGGGCCGAAGCGAGGGAGATACGCATGAGAGAGCTGGAGAGGCAACAGAAGGAGATAGAAGAGAATGCGGACAGAGTCTACGACATGTATACAGACCCTGTGAGCCGCACGACGAGGGTGGCGGCCGTGGCGGTTGCCAGCCCCCGCCTGGCCGCGACGCTCGTCAACAACAGCTTCCAGTCGAGCCGGCGCAGCTCGGAGGACTCGCTCGAGGAGACGGGGAGCATACGCGACGTCAGGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCCATGATCCAGAACGCTCAGCTGGACAACGAGAAGGCGTCGCTCAACTACCAGGTGGAGCTGTTCAAGGATCGGCTCGAGGACCTCGAGGAGTCGCACAGCCAGCTGCAGCGCGAGCACAAGGAGAAGTGCCGAGCGCACGAGCAGCTGAAGCGGGCGGCGGGGAAGCTGCGCGAGGACGCCGACTGTTACAAGCTGCAGCTGGACGAGCGGGACGAGATGATCACGAACCACGGGCTGCAGATCGTCGGGGGGGAGGAGGGCGACGCCAAGAGGGTGCTGGTCACGGTAGAGCACGCGCAGCTGCTGCAGGACGTGGGAGAGGGATCGCTCGATGTGCGGTTGCGTCGGCTGCGCGAGGAGCGCAACGATCTGACGGACGAGGTGCGGCGGTTGCAGCTGGCGCTCGAGGAAGGTCGGAGCAGGTCGGAGCAGAACCACGTGGTCGGAGCGGGGCCCACCGTCAACGGGACCGACTCGGACGAGGCGCTACAATACGCGGATACAAAGTTCAAGCTGCAGAAGGCCGAGCAAGACGTGTCTACGCTGCAGGCCAATGTGGCGCGCCTCGAGAGCCAGGTCGTGCGCTACAAGGGCGCTTCCGAGTCGTCCGAGAAGGTCGAGGATGAGCTCAAGGTCGAGCGCAGGAAGCTGCAGCGAGAGGTAAAACACGGCTGCGCTCTAGCCAAAGCGCCGGTTGTCTGCGGTGGTTTCGATTCAACTCCGTAA
- Protein Sequence
- MDVGASTFKSVVLAEARLAARRQARAEAREIRMRELERQQKEIEENADRVYDMYTDPVSRTTRVAAVAVASPRLAATLVNNSFQSSRRSSEDSLEETGSIRDVRHELKEVEEKFRKAMIQNAQLDNEKASLNYQVELFKDRLEDLEESHSQLQREHKEKCRAHEQLKRAAGKLREDADCYKLQLDERDEMITNHGLQIVGGEEGDAKRVLVTVEHAQLLQDVGEGSLDVRLRRLREERNDLTDEVRRLQLALEEGRSRSEQNHVVGAGPTVNGTDSDEALQYADTKFKLQKAEQDVSTLQANVARLESQVVRYKGASESSEKVEDELKVERRKLQREVKHGCALAKAPVVCGGFDSTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -