Blap003600.1
Basic Information
- Insect
- Brachypalpus laphriformis
- Gene Symbol
- MBD-R2
- Assembly
- GCA_945910015.1
- Location
- CAMDTZ010000090.1:100622-104786[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-19 3.6e-15 57.2 0.0 3 76 391 462 389 463 0.93
Sequence Information
- Coding Sequence
- ATGGTCCGCCGCTGTGTGATAGATACTTGTGAGTCGCGCTCGGGCTCAGCCGACCATAAGGGCGTCACATTCCACTCGTTCCCCTTCGACTCGAAAACGCGGGAGATTTGGATCGAGAACTGCCGCATCCCGGCGAGCAAGAACATCACGAAGAACATCCTCGTATGCTCGCGGCACTTCCGCCGGGCTGACTTCCAGCCTATAAAGGGCGGCAAATTCCTCCTGAAGGCCGGCTCAACGCCGTCGGTGTTCCCATGGGGTAAGACTGATTCGGGCTCCAGTAGTGGAGTCTCGGCTCCTGTCAGCAGAGTGAACAGCGAACTGGCAGAAGAGGCGGCCACGGCTTCGACGATTGAAGCTACAATTGCTCAGATTATGGCCGAAACAGCTGAGCTAAACCGTGCTGCGGGCATTGTTCCCAAGGAGTCCAAGAGGAAGACCTCCCGCTCGGAGGAGTCTTCGCTGGGAAGTCCTAGGTCACAGGGGAACATCCCACTGAAGCTAGATTCGCCAACAAATTTTACTCCTGGTGTGCGCCTGGAGGTGCAGGAAATTAACGGACAATGGCACTCGGGCAAGGTCGTCGAAGTGGACAATGACGATCGGGAAGTTCTAATAAAATTCGAGAAATCTGGGAAAACGAAGCGAGCGGAGTCAGAGGAGTGGATTCCGATGAACAGTCCAAGGCTGAGGCAGAAGGCGTCGGCTAAGCCGCCGCCAACATTCTTGGCCGAGGAGAAGTGCTTAGCCCGATGGACAGGGTCCCGGAAGTTCCCAGCCACAGTGCAGAAAGTTCTAGGCGAAGACTTGTATGAAGTCGTCTTCGACGATGGTTTCGTGAAGACAGTCCGCGGAAGTCACATGAGCAAGATTAAGCCTCCGCCAGAGAAAGTGACCACACCCACTCAGCCTGGGAAGGGAAAATCGGGATCGAAAACCGGGCCAACTTCGATTGTTGATGCAATTATTGCATCCGGCGAGCACGGAGCGAAGTCAAAGTCAAAGAAACTACCACGCAAGGATTGGCCTCTGATTTCCATGGATACACTTGACTTAGCTTCTCTGAATCTACCAGAAGTCCCTAAAGATGGTGAATGGACATGCCACTGGGTGAACGATCAGCCCATCGGTCGAGAGGGTTTTCTCCTCATTGGCGAGCACAAGAAACCCACAGTTATCGTTGATGATTGGCGTCTGCCACCAAACTGGGTGAAGCACATGTATCAGCGATCGAATGTGCTTGGCAAGTGGGACGTTATCCTTGTCAATCCGAGTGGAAAACGTTTCCGTTCCAAGGCCGATCTCAAGCAAGCCCTTGAAGATGCCGGTCAGGTGTACAACCCGGATATATATGACTTCAGCATCCATAGACGCCGTGCCAAGGATATCAATGCCTACGTCTACACTCCCGACTATAAGCCGCCTCCAAAGCCGCCTATTAGCTCAGTTTCCAGCCCGCAAACAAGCACAGTGACCAACAGTCTTACGACGTCGACATTCACAGAGACACCGGTTGCCACACCTGTGCCACCAATGGAGTTGATGACACCACCTCCGCCGAAAGCAAAGGAACACCTCGTAAAGCCAAGAACCGCTGAAGTGAGTTCTCCAAAGCCAGAGGAAGTGGCCCCATCATTGTTACCACCATTAGAGGATGGCTATGCCTACATCGGAGGGCTAAAAGTTCAAATCATCGACAACCTCTTTCGTTGTCCACAAGAGGGTTGCTACAAAAATTTCCGCAAAGAGAATCATCTACAGATTCACGTGAAACACTATCACCAGGACTTGATTAAGCTCCTCGGCGTATGTCCCAATATGCAGGATCTGGCGTTGAAACGAACCCTTGGTCACCCCGAATTAGAACCACAGCCCAAGAACCAGATTCCCAATCAACAGTTCTTTGCCAAAATGCATCAGCAAGACCTCCAACAGTCACGCTCTCATCGCAAGATGAGCACTAATCCAGCCACCGGCGTTGTCTCAGCGATGGCTTCGCCAATTCACACCACAGCTTTAGATGACATCCTTCTGGTATCGTCGACTCACGTTTCGGCTGACGAGTCAATGGACCAGAGTTCGGCCAACGCAAATTCGACTCTGGATTCATCCATTCTTGGCACAGACATATCCTTGGTTACAGCAGATACTGTGGTCAAGGTGCCGGAATCTTCTGTAGTAATTTCACTACCACCTCTGTCAACAGTTAATGCTCCACAACCTCTTCTTGAAAGTCCAGCGGTGCCGCCAGAGCCGAAGAAAGCGCGAATCTCTCCCGTCAAGAAGACATCACATGCCGGCTCTAGGAAGAGCAGTCGCCAGAGGACTACAAAAAAATATCTCACTGCTACCACTCCGACTACACCAGTTCCAGTGTTGGCTACATCGTTCGATGCCAGCTTTGGGGCGAGCGACTTCGAGGAGACTCGTCATTCATTCAACGCCACACCAGACAAGCCCAGTTCAACGAAGAAACCGAAGGTACTTCCAGTTGTTGCCAGCGATTCCACAAACAACACCGCAGATGGCAGCCTGACAACGAGCAGTTTTCCCGATCCAAGTGAATCCCCCAAGTATATCAAAGAAAATGGAGAGCTCATCAAGATTGTTCGCATGAAACAGGAGGAGATTATTAATTGCCTCTGCTCCTATGGCGAGGAGGACGGCCTGATGATCCAATGTGAGCTCTGCCTCTGCTGGCAGCATGGTAGCTGCAACGGAATCGACAAGGAGAGCGATGTCCCCGACAAGTACGTCTGCTACATCTGTCGCAACCCGCAGCGAGGTCGAGAGAGTCGAAAGTATATTCACGACCAAGACTGGATGTACGAAGGCAAACTGCCAGCGGCGAACTATCACGAGGAGAATCCCATGCACCCAGAGCGATACGAAGTTCTCAAAAAGAGTCACACACTGTCGGGCAACCTAGTTGAACTCAAGCGCTCACTTCACAGTCTCCAGGTGAAAATCAACATCGCTGGCAACAAGGACCACCCGAAAATGTACCTCTGGGAGAAGCGCTGGGATCCGATTCCAAAGGAAGCTATTAAAACCGAGGTAAAATCAGAGGACGCTGATGTCGAAATGAAGGACGTCAGCAAGGAGCTGAAATCTCCAACAGACACACAATCGAAAGTGAACATAGAACCGCACATACCACAGCCTGAGGCACCAATAGATCCGGTCGAGTGCCAACATCGGTTGCTGGAGCACATCAAAGTGCAACAGAGTTTGGTGCTGAACAGGTTGGACGAGATCGAATCTGAAGTCAATGAACTTGAAACAATGGATAACCTCGTTGATTTGAAATCAGCCAGCTTGGAGGAGACAAAGGATGTCTTGGCAACGTTTATAAAGGACCTCGAGATAATGAAGACGATTTCGAAGATTAACGCGTTGGCTAACATGAGGAATAACAATCTGATGATCATAAAGTAG
- Protein Sequence
- MVRRCVIDTCESRSGSADHKGVTFHSFPFDSKTREIWIENCRIPASKNITKNILVCSRHFRRADFQPIKGGKFLLKAGSTPSVFPWGKTDSGSSSGVSAPVSRVNSELAEEAATASTIEATIAQIMAETAELNRAAGIVPKESKRKTSRSEESSLGSPRSQGNIPLKLDSPTNFTPGVRLEVQEINGQWHSGKVVEVDNDDREVLIKFEKSGKTKRAESEEWIPMNSPRLRQKASAKPPPTFLAEEKCLARWTGSRKFPATVQKVLGEDLYEVVFDDGFVKTVRGSHMSKIKPPPEKVTTPTQPGKGKSGSKTGPTSIVDAIIASGEHGAKSKSKKLPRKDWPLISMDTLDLASLNLPEVPKDGEWTCHWVNDQPIGREGFLLIGEHKKPTVIVDDWRLPPNWVKHMYQRSNVLGKWDVILVNPSGKRFRSKADLKQALEDAGQVYNPDIYDFSIHRRRAKDINAYVYTPDYKPPPKPPISSVSSPQTSTVTNSLTTSTFTETPVATPVPPMELMTPPPPKAKEHLVKPRTAEVSSPKPEEVAPSLLPPLEDGYAYIGGLKVQIIDNLFRCPQEGCYKNFRKENHLQIHVKHYHQDLIKLLGVCPNMQDLALKRTLGHPELEPQPKNQIPNQQFFAKMHQQDLQQSRSHRKMSTNPATGVVSAMASPIHTTALDDILLVSSTHVSADESMDQSSANANSTLDSSILGTDISLVTADTVVKVPESSVVISLPPLSTVNAPQPLLESPAVPPEPKKARISPVKKTSHAGSRKSSRQRTTKKYLTATTPTTPVPVLATSFDASFGASDFEETRHSFNATPDKPSSTKKPKVLPVVASDSTNNTADGSLTTSSFPDPSESPKYIKENGELIKIVRMKQEEIINCLCSYGEEDGLMIQCELCLCWQHGSCNGIDKESDVPDKYVCYICRNPQRGRESRKYIHDQDWMYEGKLPAANYHEENPMHPERYEVLKKSHTLSGNLVELKRSLHSLQVKINIAGNKDHPKMYLWEKRWDPIPKEAIKTEVKSEDADVEMKDVSKELKSPTDTQSKVNIEPHIPQPEAPIDPVECQHRLLEHIKVQQSLVLNRLDEIESEVNELETMDNLVDLKSASLEETKDVLATFIKDLEIMKTISKINALANMRNNNLMIIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00241478; iTF_01541478; iTF_01541441; iTF_01542250; iTF_01542212; iTF_01223468; iTF_01223428; iTF_00310294; iTF_00310252; iTF_00240791; iTF_00240754; iTF_00389662; iTF_00389622;
- 90% Identity
- iTF_00241478;
- 80% Identity
- iTF_00241478;