Basic Information

Insect: Brachypalpus laphriformis
Gene Symbol: Ssrp
Assembly: GCA_945910015.1
Location: CAMDTZ010000253.1:155036-159209[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9 7.1e+04 -4.0 0.4 45 56 292 303 290 304 0.67

2 4 9 7.1e+04 -10.0 10.4 45 60 525 540 520 550 0.42

3 4 1.5e-25 1.2e-21 78.8 6.8 1 69 559 625 559 625 0.99

4 4 9 7.1e+04 -3.9 0.1 18 32 644 658 644 659 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9	7.1e+04	-4.0	0.4	45	56	292	303	290	304	0.67
2	4	9	7.1e+04	-10.0	10.4	45	60	525	540	520	550	0.42
3	4	1.5e-25	1.2e-21	78.8	6.8	1	69	559	625	559	625	0.99
4	4	9	7.1e+04	-3.9	0.1	18	32	644	658	644	659	0.82

Sequence Information

Coding Sequence: ATGGAAGCCCTAGAGTACAGCGACATCCAATCGGAAGTCCGTGGAGTAATGACGCCAGGACGCCTCAAACTTGGCGACCAGAGCATTGTCTTCAAGAATAACAAAACCGGAAAGGTCGAACAAATCAACTCCTCCGACATAGAGCTGGTGAATTCGCAAAAATTCGTCGGCTCCTGGGGCATCCGCGTTTTCACAAAGAATGGGACGCTCCACCGCTTCTGCGGGTTCAAGGACAGCGAGAACGAGAAGGTGGCCAAGTTCTTCAAGAAGCAGTACAGCATCGACATGCTGGAGAAGGAGCTGTGTGTCCGCGGCTGGAACTGGGGCACTGCCAAGTTCAACGGCTCCGTTCTCAGCTTCGACATGGACGTAAAAACTTCGTTCGAGATTCCACTGAACCATGTGTCGCAATGCAACACCGGCAAGAACGAGGTAACGTTGGAGTTTCATCAGAACGACGACGCTCCCGTTGGCCTGATGGAGATGCGTTTCCACATTCCCACTAGCGAGTCGGCGGACAACGATCCCGTGGAGAATTTCCACAACAACGTGATGAACAAGGCGTCGGTCATTTCGGTGTCGGGCGATGCGATCTCTATATTCAGGGAGATCCACTGCCTCACTCCACGCGGTCGCTATGACATCAAGATTTTCTCGACGTTCTTCCAGCTCCACGGTAAGACATTCGATTATAAGATTCCCATGTCGACGGTTCTGCGTTTATTCCTGCTGCCGCATAAGGACAACCGGCAGATGTTCTTCGTGCTGTCTCTGGATCCACCAATCAAGCAAGGTCAGACGAGGTACCACTTTTTGGTGCTGTTGTTTGGGCCGGAGGAGGATATTTCGATTGAGTTGCCGTTCACCGAGCAAGAGCTGAAGGAAAAGTACGACAATAAGATCACGAAGGAGCTGTCAGGACCGGTATACGAGGTGATGGGCAAGATAATGAAGGTGCTGATCAATAGGAAGATCACCGGACCGGGAAATTTTATGGGTCACTCAGGCACTCCAGCTGTTGGTTGCTCGTTTAAAGCCGCTGCTGGCTATCTCTATCCACTGGAACGTGGTTTCATCTATGTCCACAAGCCGCCAATACACATTCGTTTCGAGGAAATCGCTACTGTGAACTTTGCACGTAGCGGTGGGTCTACTCGTAGTTTCGACTTCGAAATCGAACTCAAGTCTGGAACAGTACACACGTTTAGTAGCATCGAAAAGGAGGAGTACGCCAAGCTCTTTGATTTCATTCAAAAGAAAAAGTTGCACGTGAAGAATACTGGCAAGAACGACAAGGGTGCCTACAAGGATGACTTTGGCGATTCGGACAATGAGAACGAACCCGATGCGTACTTGGCACGAGTTAAAGCCGAAGCTCGTGAGAAGGACTCTGATGTGGATGACGATGAAGAGGGCTCAGAGGAGGAGTCTACTGATGAAGACTTCAAACCAAATGAAAATGAGTCGGATGTTGCCGAGGAATACGACAGTAATGCGCAGAGCGACTCGTCAGATGATAGTGAAGCTAGTGGCGGTGGCGGTGGTGATGATGCTGAGAGCGCCGAGCGAAAGGAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAAAGGAGAAGAGGGAACGCAAGGAAAAGGTGGTGAAAAGGACTAAAAAGAAGGACAAAGATTCGAATAGACCGAAGCGTGCCACAACAGCTTTTATGATTTGGATGAACGAAACTCGTGAGGAAATCAAAAAGGATAATCCTGGCATTAAGGTGACAGAAATCGCCAAAAAGGCAGGAGAGATGTGGCGTGAACTAAAAGACAAATCGAAGTGGGAGGAGATGGCTGCCAAGGATAAACAGCGTTATGCGGACGAAATGAAGGAGTACAATGCATCGGGTGGTGGCGCTAAGGGTGGTAGCGACGATGAGGGTGGGAAAGCACTGAAGAGGAAGAAGGAATCTCCAACGAAGAAGCAGACTACCATATCAGGCGCCTTCAAAAGCAAGGAATACATCTCGGGCGATGAATCATCGTCTGATGAATCCGGTGGTGGTGACAAGAAGAAGCTAAAGAAGGATGACAAGGAAACCAAGAAAAAGTCAGAATCGGAGGGAGAGGATGAAGAATTGGAGTCTTCTGGTGAATCTGACGATGAGAAGAAAAAGAAGGGCAAGGCAGTCGTAAGTTTTGAGTGTTTGCCACAGGAAACAAAGAGCAAACCAGAGTCAAAACCTTTACCGAAGAAGAAAGACGAGTCTGATGAAGGAGCAGAGTCAGGGGACTCTGAGAAAGAAAAGAAGAAAAGCAAATCGCCGGTAATTATATTAAATTTCCTTTCATTTTTAATCTTTAATTTTGCTAATGGCAAACCAGCTTCCAAAGCTGCACTGAAAAAGAAGGGCGCATCTGAGGATGAAGAGAAGGAGGATAAGGAGATAACTTCATCTGAAGAATCTGAGGGCGAGAAGTCCAAGACTAAGGCGAAGCCCAAACCCGCATCGAAGGTGGGGCCGAAGAAAAAGGCAAAATCTGGAGACGAAGAAATAGTGTCGTCTGGAGATTCAGAGGACAAGAAGGCCAAGACTAAGGCGAAGCCCAAACCTGCTTCGAAGGTGGCGCCAAAAAAAAAACCAAAATCTGAAGACGAAGAAGTGGAATCCGCTGGAGAGGACTCTGAGGAGGAAAAACCCAAGAGCAAAGCACCCGCGGCAAAGAGTAAGCCAGCGTCGAAACCTAAGCCCGCATCTAAGGTCAAATCAAAGAAAAAAGATGAATCTGAAGATGAGGACGAAGAAGTTGACATACTGGATGACGAAGATAGCGATTGA
Protein Sequence: MEALEYSDIQSEVRGVMTPGRLKLGDQSIVFKNNKTGKVEQINSSDIELVNSQKFVGSWGIRVFTKNGTLHRFCGFKDSENEKVAKFFKKQYSIDMLEKELCVRGWNWGTAKFNGSVLSFDMDVKTSFEIPLNHVSQCNTGKNEVTLEFHQNDDAPVGLMEMRFHIPTSESADNDPVENFHNNVMNKASVISVSGDAISIFREIHCLTPRGRYDIKIFSTFFQLHGKTFDYKIPMSTVLRLFLLPHKDNRQMFFVLSLDPPIKQGQTRYHFLVLLFGPEEDISIELPFTEQELKEKYDNKITKELSGPVYEVMGKIMKVLINRKITGPGNFMGHSGTPAVGCSFKAAAGYLYPLERGFIYVHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGTVHTFSSIEKEEYAKLFDFIQKKKLHVKNTGKNDKGAYKDDFGDSDNENEPDAYLARVKAEAREKDSDVDDDEEGSEEESTDEDFKPNENESDVAEEYDSNAQSDSSDDSEASGGGGGDDAESAERKEKKKEKKEKKEKEKRERKEKVVKRTKKKDKDSNRPKRATTAFMIWMNETREEIKKDNPGIKVTEIAKKAGEMWRELKDKSKWEEMAAKDKQRYADEMKEYNASGGGAKGGSDDEGGKALKRKKESPTKKQTTISGAFKSKEYISGDESSSDESGGGDKKKLKKDDKETKKKSESEGEDEELESSGESDDEKKKKGKAVVSFECLPQETKSKPESKPLPKKKDESDEGAESGDSEKEKKKSKSPVIILNFLSFLIFNFANGKPASKAALKKKGASEDEEKEDKEITSSEESEGEKSKTKAKPKPASKVGPKKKAKSGDEEIVSSGDSEDKKAKTKAKPKPASKVAPKKKPKSEDEEVESAGEDSEEEKPKSKAPAAKSKPASKPKPASKVKSKKKDESEDEDEEVDILDDEDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01522640;
90% Identity: -
80% Identity: -