Bscu009727.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459112.1:116029661-116030278[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-08 6.4e-05 24.1 0.0 18 39 2 23 1 26 0.85
Sequence Information
- Coding Sequence
- ATGCCTATTAGGGAAGCTTCAAGAAAGTTCGGCATTCCTAGATCCACTCTTCAAGACCGGGTTCACGGAAGAGCATTGGACGAGCCTGGCAAAAGGGGTCCTTGTACTGTACTTTTAATTAATGAGGAGATGAAACTGGTGAGCTGGCTAACAACTTTGGCCAAGTGTGGTTTTCCCCAAAATCCAGGAAATCTTCTTAAAAcggtgcaaaatattttaaaagatgaaggTCGAAAAACTCCATTCAAAGGTAGCAAACCAGGAAAAAAATGGTATTACAACTTTTTAGGGTGTCATCCCACTTTAAGTTTACGAACACCTGAATCCCTTACAAAATCTCGGGCTGCAATTACAGAGCAGGGAATAAGGAAGTGGTTCCAGGACCTTAAGAATTATCTTAAAGAAGAAAATGCGGAAGATATTCTTGAAGATCCATCCAGAATTTTTAACTCTGATGAGACCGGCTTCAGTATGGCTCCCAAAACTGGAAACGTAATTGCTCCAAAAGGATATAGAAACGTATATCAGATTAAATCaggaaatgaaaaagaaactcTGACAGTTCTTCTGACATTCACGCCCTGCAATCAAAAAATATCGATTACCAAGTTGTGCTAG
- Protein Sequence
- MPIREASRKFGIPRSTLQDRVHGRALDEPGKRGPCTVLLINEEMKLVSWLTTLAKCGFPQNPGNLLKTVQNILKDEGRKTPFKGSKPGKKWYYNFLGCHPTLSLRTPESLTKSRAAITEQGIRKWFQDLKNYLKEENAEDILEDPSRIFNSDETGFSMAPKTGNVIAPKGYRNVYQIKSGNEKETLTVLLTFTPCNQKISITKLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310959; iTF_00315087; iTF_00724701;
- 90% Identity
- -
- 80% Identity
- -