Bscu017494.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459113.1:8491939-8492477[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-11 1.3e-08 35.9 0.0 2 44 16 57 15 58 0.93 2 2 1.3 9.2e+02 1.2 0.1 14 23 137 146 132 148 0.82
Sequence Information
- Coding Sequence
- ATGCCGCGAAAATATACAAGAAAAACCAACAGAGGAAGTTGGAGCGAAGGGGCGATGGAAGAAGCCAGAAAAAGTATTGAAGAGGGGATGTCCCTTCGAAAAGCCGAAAAATTATTTGGCGTACCGGCTAGAACGCTGTCGAGACGGTTAAAAGACGGAAATTTTGCGAAAAAACCGCTTGGCTTTATGGGTGTTCTTGGaatagaaaacgaaaaaaagctagcagtacacataaaaaaattagCGTCTGCTGGTTTTGCCGTTGACAGGGAGGGTGTTCGGAGCTTGGCGTTTGAGCTAGCGGAGAAAATGAATGTCAAACATAAATTTaacataacaacaaaaaaagctgGCTATGCTTGGCTTGCCTCGTTTTTGGAAAGGAATAGGGACATTTCGCTTAGGCAATCCGAAGGACTTTCCCTTTCCCGTGCTCAAGGTATGAGTCGATCGGCAGCAAATGTCATGTCCTGA
- Protein Sequence
- MPRKYTRKTNRGSWSEGAMEEARKSIEEGMSLRKAEKLFGVPARTLSRRLKDGNFAKKPLGFMGVLGIENEKKLAVHIKKLASAGFAVDREGVRSLAFELAEKMNVKHKFNITTKKAGYAWLASFLERNRDISLRQSEGLSLSRAQGMSRSAANVMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00664772; iTF_00665566;
- 90% Identity
- -
- 80% Identity
- -