Bneb013536.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:23449567-23451171[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3 7.7e+03 -1.5 0.1 23 34 172 183 168 195 0.81 2 10 0.0017 4.3 8.9 0.1 21 44 198 221 190 230 0.88 3 10 7.4 1.9e+04 -2.7 0.1 21 32 226 237 221 248 0.78 4 10 2.8 7.1e+03 -1.4 0.0 22 44 255 277 252 285 0.79 5 10 0.17 4.3e+02 2.5 0.0 18 44 278 305 271 310 0.75 6 10 0.0048 12 7.5 0.1 21 44 364 387 347 395 0.88 7 10 0.51 1.3e+03 1.0 0.1 26 44 397 415 387 425 0.84 8 10 4.6 1.2e+04 -2.1 0.1 21 43 420 442 411 446 0.81 9 10 0.0076 19 6.8 0.1 21 43 476 498 465 504 0.85 10 10 1.7e-05 0.044 15.3 0.3 21 44 504 527 499 532 0.89
Sequence Information
- Coding Sequence
- ATGGATAACAATGATAACATGGATAAGAAATCTTTTAAGAAGTGTTTTATTAAAACAGAACCTGACGAAAATTTATCCGATACAAGTAATTACAGTAATTACCTTTTAACCAATGTAAAAGTGGAACCACCTGATCAATTAGATGAAAATGAAATGAAACGTGAACCAATAAATTACAATTCGATTAAAGCAGAACCAGAGGATTATAGctatatttcaaataatgaagTAAAATCAGAACCAATCAATTATAGTTTCATCAACACAGAACAAAAGGCAGATTTGTCGGaggtaaataatttaaacgaaaaaattaaagtggatCCGCTtgatttacaaaatgacgtaaAGCTAGAAACGGTATCGAGTTTACATACGGAAGCAAAAATTGAAGACTCTACATCAACTAATACAAatacaagtaaaaaaaataccGTCAATAAAGTGCCAAAACGTAATAAAAATACAACTGAGTTAAGTAACGGTGAAACAGgccaagttaaaaataaaaaaggtccatTTACATGCAACGTATGTTCAAAAACAATCCTTTGTTTAAGTCATTTCAAACTCCACGAACGAATTCATACGGGCGAAAAACCACACAAATGTGACATATGTGCGAAAACATTTCGTCaaatgataaatttaaaaattcatgaacggATACATCGTGGCGAAagaccatacaagtgtaatctGTGTTTGAAAACGTTCACTTACATAAACAGTTTAAAAGTGCATGAAAAAACACACACCGGTGAAAAGTCGTACAAGTGTGACACGTGTTCGAAAACGTTTATAAACTCAAGCAATTTGAAGGCGCATCAAAGAACTCAtagcggtgaaaaaccattcaagtgtacgatatgtttgaaaaattttgccCATTCAAGTAgctttaaattacatataaaaaccCACGCGAAACAGGCATTACTCGAAGATAGCACCGAAGTAAATGACTCAAATAAGCCGCACCGTAAAAAGTGGTCACCGTATAAGGgtgaaaagaaatttaaatgtgATATTTGTTCGAAAGCTTTCGCTCACGCGTGCAGCTTAAATTTACACAAGAAAAATCACACCGGTGAACGGCCGCACGCGTgtaaaacatgttttaaaacgtttGTTAATTCAAGTAACTTACGATTACACGAACGTATTCATAGTGACGTAAAACGTTACAAATGTTCCACATGTTTGAAAACATTCAATCAATCCGATCACTTAAGAGCGCACGAGCGAACGCACACCGGCGAGAAACCGTACAAATGTGACGATTGTGGACGAACATTTACACATTCGCAAAGTTTAAAGTGTCATAAACGAATTCATACCGGTGACCGGCCGTACAAATGTAAACAATGTCCAAAATCGTATACACAAATAGAGCATTTAAAAGTTCACGAACGAATTCATAGCGATGAgaaaccatacgaatgtaacatatgttttaaaacgtttCGATATCAACAGAATTATAAAGTTCATCATATGTCGCATACCGGTGAACGGCCCTACAAATGTAATACATGTTATAAGACATTTACGGAAGCGCGTAATTTACGgagacatgaaaaaattcataataagtACAAATAA
- Protein Sequence
- MDNNDNMDKKSFKKCFIKTEPDENLSDTSNYSNYLLTNVKVEPPDQLDENEMKREPINYNSIKAEPEDYSYISNNEVKSEPINYSFINTEQKADLSEVNNLNEKIKVDPLDLQNDVKLETVSSLHTEAKIEDSTSTNTNTSKKNTVNKVPKRNKNTTELSNGETGQVKNKKGPFTCNVCSKTILCLSHFKLHERIHTGEKPHKCDICAKTFRQMINLKIHERIHRGERPYKCNLCLKTFTYINSLKVHEKTHTGEKSYKCDTCSKTFINSSNLKAHQRTHSGEKPFKCTICLKNFAHSSSFKLHIKTHAKQALLEDSTEVNDSNKPHRKKWSPYKGEKKFKCDICSKAFAHACSLNLHKKNHTGERPHACKTCFKTFVNSSNLRLHERIHSDVKRYKCSTCLKTFNQSDHLRAHERTHTGEKPYKCDDCGRTFTHSQSLKCHKRIHTGDRPYKCKQCPKSYTQIEHLKVHERIHSDEKPYECNICFKTFRYQQNYKVHHMSHTGERPYKCNTCYKTFTEARNLRRHEKIHNKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239574;
- 90% Identity
- iTF_00239574;
- 80% Identity
- iTF_00239574;